Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04502 ATGGAGGCGGATTCCGTGACCAATGATATTCTCACACTCGCACACGATGCTTTTGATGCCAACGATAATGATGATGAAGCTATGGAAGGGGAAACATGTGGAATATGCATGGATATGGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAACAAAGTTGAGGATGATTCACTCCTCAGAGATGACGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGAAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCAGTACATCAATAGCATGTGATTCATGTGATATATGGTATCATGCATTCTGTGTGGGATTTGATACTGAAAGTATGTCAGACAATACATGGTTATGCCCAAGATGTGTAGCAGATGATGTTTCTAAAGGAGCATCTAATTCAATGGAGAGGACAACCGTGGATTGTAATGCAGACAATAGTAACAATGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACAGCTGTTGTTGTCTCGCTGGTTGATAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGGTGGGGATCCAATGACTGAATCATGTATTTTAATGTTTGACACAAATGATCGGCAAAGTGGCGAAATGAGGACAAATTCATTACCGATCATGGAGGAAGAAGAACTGGAACTGTCTTTATCAAACAATTTATCCTGTAGCCTAACTTCTATGTCCTTAGTGCATGATGATTTAGAGAAAAGTACCAGTGGAGCAATGAATGAACCCAGTCCCTTGGATGGAACCAAGTTTTTGGATGAATCCCATACCAAAACTAGTCCATCCAGAATTGAATCCAATATGGGTCTTGATCTTGGTTTGTCAGTGGGCTCTTTTTTATCTGTTGATAATGCAGACAAGAGTGAACCAAAAGATCAAGCAACCATTGGCCCATGCTTGACTTCAGAAGAATGTTTTTCGAAAGGAGATGAAATTGAAGTCAATGCTTGTAAAGACAATGTCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTTCTGAGCAAGTTCATATAAAGGCTGAGGATGGAGATGCCGAGCCTGAACTTCCTGATGAAGTTGTGCCAAAGAAAATTAAAGCTACTGATAGGCAAATGAGTAATACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTACAAAACACCCTGCTTTAAAACATCCTCCAACAAAGGCAACTGTCACACCAGATATAATGAATATAGTTAAAGGGACGAACCGAAGGCTTTCCAAGGGACATAGTGACACTAATGCTTGTGACAAGTCATCTGAAAGCAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCCATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGCAAAGTGCGTGAAAATTTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGATGGTCCAGAATCAAAGCAAGCCTTGGAATGTCAAACCAAGAATCCTATACTTTCGAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTGAAACCTCTCTCTGTGCTTAAAACTGTTGATAACTCTGAGCAAACTAAACAAAACAACCCATCAGAGAAAGTACCAAATCTATCCGTTGATAACAATACTATTAAACCAACAGATGTAAACTATCTCTTATCAAAGATCAGTTTTGTTTCATCTGAAAAAAAAGTAGACAAGAAGATTGTTCACGGCCCAGTTGGTGATAATTTAACTTCTGGTAAAATACGTTTAAACAACCACTTAGAAAGGACACCAATCTCGTCAGCTGGTGCCAAAACTGGCACAAAGGAGTTAGGTCTTAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCAAGGAAAACAGCTACAACCAGCGGAAACACAGCAAATGGAAATCAGGAAGAGAACGCAATATTTAAAGGACATTATCCTTTACTTGCCCAACTGCCAATTGATATGAGACCAGCATTGGCACCTTCTCGCCACAATAAAATTCCTTTATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAAGAACACAAATCTGTCTGTGATTCGCAGAACTGGTATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTACTTGAACCTTTGTTCACAGGAGCTCTTGCATCGCACGAATAACACAACATCTGATGTAGCCTCAGATACAAGTCCACCAGCCTCATCAGCAATGCTTACCGATCAACAATCAGAACTAAATACTGTTGATCTTTCAGCTAACCCTGAAGTTGAAACAGCCTTGAAAAATGCTGGTCTGCTATCTGACTCCCCACCTAGTAGTCCACATGAGAACAGAGAAACATGTAATGGTGACATGTTGGGGCCCGATAATATACTTGAACTGGATTCGCATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGAGTCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCACCAAATTGTCGCAATGATGCAGTCCATAGGGATAGGGCTTCTGTTTCTTCTGAGCTCCTACCCTTTGAGAGTGGTGTTGAGCCACCACTTGACACAGAATTTGAAGACTTATTATACGGCCCAGACAAAGAACCACTCATAAAAAAATTTCCAGCCGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGGAACTCTAAGCGTCGCTGATGACTACCATAATGATGCACAACATGCTTTGGATAATGCAGTAAAAGCTTCAGAACGGGGGAATGCGAATCTAACAGAAAAAGTTTCTGATACTACTATCACTGACCAATCTTCTAATATATCTGAGGCTGGTGAAAGTTTTCAACGGAAGGAAGAGAAATCTGATGTCACTGCTAAGCAGATTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGTTTATATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAAGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACAGAAAAAATTGA 3867 0.4024 MEADSVTNDILTLAHDAFDANDNDDEAMEGETCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSLLRDDDDWSIEGKNNTLSFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLSTSIACDSCDIWYHAFCVGFDTESMSDNTWLCPRCVADDVSKGASNSMERTTVDCNADNSNNECHAEDSFSGKVSVSVADTGETAVVVSLVDRTKWVPATSEKSLLPFEVGGDPMTESCILMFDTNDRQSGEMRTNSLPIMEEEELELSLSNNLSCSLTSMSLVHDDLEKSTSGAMNEPSPLDGTKFLDESHTKTSPSRIESNMGLDLGLSVGSFLSVDNADKSEPKDQATIGPCLTSEECFSKGDEIEVNACKDNVRVAGGKRKHADYSSEQVHIKAEDGDAEPELPDEVVPKKIKATDRQMSNTNDTANDHLLENATKHPALKHPPTKATVTPDIMNIVKGTNRRLSKGHSDTNACDKSSESKGNMAGLRVKKIMKRNSEDRESSLVVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGPESKQALECQTKNPILSRLYLADTSVFPRKEDVKPLSVLKTVDNSEQTKQNNPSEKVPNLSVDNNTIKPTDVNYLLSKISFVSSEKKVDKKIVHGPVGDNLTSGKIRLNNHLERTPISSAGAKTGTKELGLKSGCMKNDKRKWALEVLARKTATTSGNTANGNQEENAIFKGHYPLLAQLPIDMRPALAPSRHNKIPLSVRQTQLYRLTERLLKNTNLSVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTTSDVASDTSPPASSAMLTDQQSELNTVDLSANPEVETALKNAGLLSDSPPSSPHENRETCNGDMLGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADCEESERNEVPGEASCSPNCRNDAVHRDRASVSSELLPFESGVEPPLDTEFEDLLYGPDKEPLIKKFPAGESRSLHGDGKTGTLSVADDYHNDAQHALDNAVKASERGNANLTEKVSDTTITDQSSNISEAGESFQRKEEKSDVTAKQIDSVNHITKKVEVYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN* 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04502 1288 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Phac2g04502 1288 MobiDBLite consensus disorder prediction 318 351 - -
Phac2g04502 1288 MobiDBLite consensus disorder prediction 970 984 - -
Phac2g04502 1288 MobiDBLite consensus disorder prediction 926 947 - -
Phac2g04502 1288 SMART PHD_3 132 184 IPR001965 -
Phac2g04502 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Phac2g04502 1288 Pfam PHD-finger 148 184 IPR019787 -
Phac2g04502 1288 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Phac2g04502 1288 SMART ring_2 33 71 IPR001841 -
Phac2g04502 1288 SMART ring_2 124 183 IPR001841 -
Phac2g04502 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 189 IPR013083 -
Phac2g04502 1288 Coils Coil 538 558 - -
Phac2g04502 1288 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Phac2g04502 1288 MobiDBLite consensus disorder prediction 703 724 - -
Phac2g04502 1288 Pfam Ring finger domain 32 72 IPR001841 -
Phac2g04502 1288 MobiDBLite consensus disorder prediction 968 990 - -
Phac2g04502 1288 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Phac2g04502 1288 PANTHER RING FINGER PROTEIN 41, 151 115 1278 - -
Phac2g04502 1288 SUPERFAMILY RING/U-box 24 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04502 Phac-Chr2 42821940 42835603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04502 33 93 C3H Transcription Factor Family AT3G58030 38.095 1.89e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac2g04502 PHD 3.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04502 - - gmx:100808102 2098.94