Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04490 ATGGCTACCTCAGCCATATTTTGTGCTTTCTGTCTCCTTCTTTTCCATCTCCAAACCACAAGAGGGAATAACAACCAACAGCAACAGGCGAATTGTAACAGCTTGAGATGCGGCAATTTAGACATTCAGTTTCCTTTCGGTTTGAAACACTCCGACCAAGATCCTCGCTGCAGGTATTTCCCAGTTCCAACTTTCCAACTTTCTTGCATCAATCGCACACAAACAGTTATAGAGCTCCCAGGTTTCGGGAACTTAGTCGTCAAAAACATCGATTACGACTCCCAAAGCATCCAAGTCAACGACCCCAATGGCTGCCTTCCAAAACGGTTCTTACACCCCTGGAACCTTTCGGATTCACCTTTTTCTTTGAACCCCTTGATTTATGGATCCTCTCCCTTTAACCTCACTTTCACGCGTTGCCCTTCCAACGTCACGGCCTCCCCTCGATTCCCGTTGATGCCGGTTTCGTGCCTGAGCGACAACCCGAACTATTCGGTGATAGCTTCGTGGTCACAACCCATTGACTCGTCAACGGTCATGTCGGAACGGTGCCGAGTAATGGCTCATGCTCTTGTTCCTCTCCCGGTGTTGGACATGTCCATGTGGCCCTTCTGGTCCGATCTCAACACGGACCTTGAACTGGTGTGGACCGAACCCAGGTGCAGCGATTGTGCACTCACTGGTCAACTTTGTGGCTTCTCTAGTCAGAAAAATCAAAGTCTTCGAGTTGGCTGCTTTCCTAGGGACTCCGGCAAAGGTCTTTCAAGGAGTGCGAAGTATGGGTTAGCCATTGGAGTGGGAATACCAGGTCTGTTATGCTTCATCGGAATTTCTTGCTTTGTGTGCGGTAAGGTTAGGATGCTGAGCCACCGTCGCCGTCGCTCACATCTTCCCGTCACCATTTCCCTAGAACCCGTTCCTTTTGTAGCGGGTCTTGACGGTGCCACAATTGAAAAGTATCCAAAAACTCTGATCGGAGAGAGTGGTCGGTTATTGAAGGCGAACGACAACACCTGCGCAATTTGCCTCTCTGAATATCAACCGAAAGAGACGCTAAGGAGCATTCCGGAATGTGACCATTATTTTCACGCAGATTGCATAGACGAGTGGCTGAAGTTGAACGCCACCTGCCCCCTCTGCCGGAATTCCCCCGACACATCTACACCTTCCTCTTCTTCTTTCTCTCCCACTTCCTCCTCATTCTCCTCTCCACACTAG 1218 0.4975 MATSAIFCAFCLLLFHLQTTRGNNNQQQQANCNSLRCGNLDIQFPFGLKHSDQDPRCRYFPVPTFQLSCINRTQTVIELPGFGNLVVKNIDYDSQSIQVNDPNGCLPKRFLHPWNLSDSPFSLNPLIYGSSPFNLTFTRCPSNVTASPRFPLMPVSCLSDNPNYSVIASWSQPIDSSTVMSERCRVMAHALVPLPVLDMSMWPFWSDLNTDLELVWTEPRCSDCALTGQLCGFSSQKNQSLRVGCFPRDSGKGLSRSAKYGLAIGVGIPGLLCFIGISCFVCGKVRMLSHRRRRSHLPVTISLEPVPFVAGLDGATIEKYPKTLIGESGRLLKANDNTCAICLSEYQPKETLRSIPECDHYFHADCIDEWLKLNATCPLCRNSPDTSTPSSSSFSPTSSSFSSPH* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04490 405 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Phac2g04490 405 SMART ring_2 339 380 IPR001841 -
Phac2g04490 405 Pfam Ring finger domain 337 381 IPR001841 -
Phac2g04490 405 MobiDBLite consensus disorder prediction 383 405 - -
Phac2g04490 405 SUPERFAMILY RING/U-box 332 386 - -
Phac2g04490 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 386 IPR013083 -
Phac2g04490 405 CDD RING-H2_EL5-like 339 381 - -
Phac2g04490 405 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 384 IPR046948 -
Phac2g04490 405 Pfam Wall-associated receptor kinase galacturonan-binding 32 101 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04490 Phac-Chr2 42727072 42731623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04490 31 384 C3H Transcription Factor Family AT2G46495 37.119 1.60e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04490 - - gmx:100810240 592.423