Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04392 ATGGGCGGTTGCTGTTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATCAGTATCCAAGAGCATCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTGCTTTCTCTGGACGACTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACTTTTGGTACCACTCAAACTCCACCTGTAACTCAAGAAATTCGTAGTGACAAGAATAATGCATCGTTTCATTCCACAAATTCTAGTACAATTCAAGAACAAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGACTGATCTAGAGTTAGATTCTGCTAAGGATTCTGAAATTGAACTTGCAAAGTCAGGAAAACCTGTAGTTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTTGCAACACAGTGTGATCATCATTTTCACCTTGCATGTATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 642 0.4143 MGGCCCCCSSKETVLSAPPAYYYQYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPVTQEIRSDKNNASFHSTNSSTIQEQVSGDNHGTPVKMEELKESECKVQTDLELDSAKDSEIELAKSGKPVVLVEEEDTCPICLEEYDAENPKLATQCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04392 213 SUPERFAMILY RING/U-box 155 209 - -
Phac2g04392 213 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Phac2g04392 213 Pfam Ring finger domain 160 202 IPR001841 -
Phac2g04392 213 MobiDBLite consensus disorder prediction 94 117 - -
Phac2g04392 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 209 - -
Phac2g04392 213 SMART ring_2 162 202 IPR001841 -
Phac2g04392 213 CDD RING-H2_AIRP1-like 158 206 - -
Phac2g04392 213 FunFam Putative E3 ubiquitin-protein ligase RHB1A 139 207 - -
Phac2g04392 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 208 IPR013083 -
Phac2g04392 213 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04392 Phac-Chr2 42038725 42041966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04392 1 209 C3H Transcription Factor Family AT5G41350 53.774 7.18e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04392 - - gmx:100816369 395.586