Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04367 ATGGAAGGGGTTATTGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTCATTGAGCGGATCAAGACTTCTTTCTTGAATAATTTGCATGTCAATGTTCCTAATAAGTCAGGCACTACATTGAAATCAAGGAACGAGGAAGATCTTGCATATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTATGACATAGCCAACAGAACCTCTCCAGATGGTAGTTCAAATGCATTCCAATCTAATCAACCACTAGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAATTATGGATGATGAGCTTAGTAACTGTGCTCATAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTCCTTCTGCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTGTCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAGAATGCATTCACAAAAGTTCCATCAGGAATCAAGCTTTGCTTGTTGGAGGACAGAAGGGGCAATGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGATGTTGTTTGAAGTTCCTCAAATGCACTTGGATGGTCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGACTAGAGACTGATGAGATTGGCATGAACCACGTCATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAGGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCAAAGAGGGGTAACATATATAGAGCCCGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAACCACAATGGCAAGAAATCAGTTGTAAAAAAGAGAAAGGTTTGCGGTGTAGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGCAGTTATGCTAATGATGTTACTGTGAGTACTAGTGACAATGAAATTGTGATTGAAATGAAGTGCCCCTCCAGAGCAGGAAGGCTACTAGAAATTATGGAAGCAGTGAATAGTTTCAATATAGATTTTAATTCAGTTCAGTCAACAGAGGCTAATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTGTTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCTTCGAAGTTCTGA 1395 0.3921 MEGVIELGTTEHVSEDFSLIERIKTSFLNNLHVNVPNKSGTTLKSRNEEDLAYVAFDNNVESIPEIGYDIANRTSPDGSSNAFQSNQPLDETFMVERITSGTSQVQSWQIMDDELSNCAHNSMNSSDCISQTFASPENIPSAPKCNNPSDPFARDIQKCNNPKMTLVDPRSDDWHYQRVLSDLLKTSDQLLMRMHSQKFHQESSFACWRTEGAMDCQWPRSGTSQKLLKKMLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKRLERRIKELEAQRGVTYIEPGTRRSPQDMVERTSDHYFSKNHNGKKSVVKKRKVCGVDETGKEINSDALKGSYANDVTVSTSDNEIVIEMKCPSRAGRLLEIMEAVNSFNIDFNSVQSTEANGNLYLTIKSVFTGATVATTKRIKQALQKVASKF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04367 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Phac2g04367 464 Coils Coil 301 328 - -
Phac2g04367 464 SMART finulus 268 317 IPR011598 GO:0046983
Phac2g04367 464 PANTHER TRANSCRIPTION FACTOR TT8 1 462 - -
Phac2g04367 464 Pfam Helix-loop-helix DNA-binding domain 266 312 IPR011598 GO:0046983
Phac2g04367 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 329 IPR036638 GO:0046983
Phac2g04367 464 Gene3D - 260 324 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04367 Phac-Chr2 41882434 41886775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04367 1 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 38.969 2.90e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g04367 HLH 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04367 - - gmx:100808167 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g04367 2 41882434 41886775 Phac2g04367 2 41882434 41886775 ECH