Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04335 ATGGCATTCAGCGGTACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCACTTCGTCGAAGGTATATCTGCCGATGGAGTCTCTTATCACAAAAACTGCTTCAGATGCAGTGTTTGCAATGGCCTTCTCGCGATGAGCAACTACTCCTCCGGCGATGGAGTTTTATACTGCAAGGTGCATTTTGAGCAGCTTTTGAAGGAATCTGGCAGCTACCCCAAGAAATCCCAGTCCTCGGGAAAGCCACCAAACGAGCTGACTAGGGCACCAAGCAAACTTTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGCTCAAAATGCAAGAAAACTGTCTATCCACTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGCGCACATGGAGGGTGTTTCCTGACTCCTTCAACCTATGCTGCCCTTGATGGCTATCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAGAACTGAAATGCTACAAGAACAAGAGGCTGCGCCTGTGGAGAATAAGAAGAGTGAAGCTGATCGCTCAGAGTCAGAGGCAGAGCCTGAGACAGAGACAGAGACAAAGACAGAGGCAGCAGAGGTAGAAGCAGAGGCAGTGACAGAGACAGAGACAGAGACAGAGAAAGAGACAAAGGAAGGTGAAGAAGCTGATGAGGAACCTAACACTGAGAAAGAGCAGTAG 753 0.4741 MAFSGTQQKCKACDKTVHFVEGISADGVSYHKNCFRCSVCNGLLAMSNYSSGDGVLYCKVHFEQLLKESGSYPKKSQSSGKPPNELTRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKRTEMLQEQEAAPVENKKSEADRSESEAEPETETETKTEAAEVEAEAVTETETETEKETKEGEEADEEPNTEKEQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04335 250 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Phac2g04335 250 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Phac2g04335 250 MobiDBLite consensus disorder prediction 234 250 - -
Phac2g04335 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Phac2g04335 250 Gene3D Cysteine Rich Protein 2 71 - -
Phac2g04335 250 Gene3D Cysteine Rich Protein 98 168 - -
Phac2g04335 250 MobiDBLite consensus disorder prediction 179 250 - -
Phac2g04335 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Phac2g04335 250 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Phac2g04335 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Phac2g04335 250 Pfam LIM domain 10 64 IPR001781 -
Phac2g04335 250 Pfam LIM domain 104 159 IPR001781 -
Phac2g04335 250 SMART lim_4 9 61 IPR001781 -
Phac2g04335 250 SMART lim_4 103 155 IPR001781 -
Phac2g04335 250 PANTHER OS06G0237300 PROTEIN 5 91 - -
Phac2g04335 250 MobiDBLite consensus disorder prediction 186 233 - -
Phac2g04335 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Phac2g04335 250 FunFam LIM domain and actin-binding 1 98 168 - -
Phac2g04335 250 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04335 Phac-Chr2 41687506 41689264 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Phac2g04335 LIM 3.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04335 - K09377 gmx:100499865 363.614