Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04328 ATGTGGGCTTGGATTCTTGGTGAAGGGCGTAGGGCGGTGTGCGAGGTGGCGTGCACCTACAATTGGGTGGCGCTCCGGCACATGGGTGGTGGTCCAAGAACCTTTCCGGGGGGCGTGAGCAAGTGGAAGTGGAAGCGAATGCACGAGAAACTCGCAAGAGACAAACAGATGAGACTTATCGAACAAGAAAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGTTCCACCCTCTCCCCCGACCACCGCTCCGCCGCCGCCGCCACACACCGTCCTTTCTCCCCTAACGACCACGTCAAAGCCCTTGCCGACCGCTTCGTCAAAGAAGGCGCCCAAGATCTCTGGAACGCGCGCGACGGTCCCCTGACTTCGAACCCGACACCGAACCCGACACCGAACCCGACACCGAACCTGACACCGACCCCAAACCTTAATTTTCTCCCCAAACATTCTAGGGCCTACCGTTCGGTTCCCGAGGTTAGGAACAACCGTGTCGGGGCCCACAAGTATAGGTTTTGGCGGAAGGGTAGTGATGATTCTTCTTCCGGTGATAGCGAGAGTGAGAATGAGAATGAATTGAGTTTGAAGACGGGTAGCAGTGCTTCTTTGGGGGAGTATGATGTGAAGAGAGAGAAGAGGGTTGTGCCTAAGACATCTGAAGAGGTTGAGTTTATTAGGCATGAGCTTAATAAGCGGAAGTTGAGACAGAATGAGGAGCAAGAGAGTGAGAAACAACACAGCTATGAAAGCATTCTAAGCAACACAAGATTTGATGAGTGCGGTATATCACCGCAAACTGTCAAGGCACTTTCTTCTGCTGGTTATGTTCATATGACACGGGTACAAGAGGCTAGCCTCTCGATTTGTCTTGAGGGTCTGGATGCTTTAGTGAAATCTAAAACTGGCACCGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAAAACATCTCAACGGGTCCCCCCAATATATGTTCTTATTCTCTGCCCTACAAGGGAACTTGCTAGTCAAATTGCCGCTGTAGCAAAAGTTTTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGTCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTTCGATTAATGGGCTTGCAGATGCTTGTTCTTGACGAAGCTGATCATTTACTGGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGACTGTTTGCCCCGTCAAAGGCAATCATTACTCTTTTCTGCAACCATACCAAAGGAGGTACGTCGTATATCCCAGCTTGTTTTGAAAAGGGAACACAAATATATTGATACAGTTGGAATGGGTTGCGTGGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCGTTGCTCCTCACGAGTCACATTTTCAATTAGTGCATCATATTCTGAGGGAGCATATCTTGCAAACACCTAATTATAAGGTTATTGTATTCTGTATAACTGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATGCATTCACGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTCACCTTAGTCGTACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGCCTTGGAAGAACAGGTCGGGAAGACAAAGAAGGGGAAGGCCTATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGATATTAAGGATCTACCTCTACAGGAATTCCCCTTACCTGACATAGATCCACACGCAAAACTGAAGATTGAGAATTCTATGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGCTATTATAACTCTATCAGGGAAATTGGGAGGGAAAAGACCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGGAAATAG 2178 0.4591 MWAWILGEGRRAVCEVACTYNWVALRHMGGGPRTFPGGVSKWKWKRMHEKLARDKQMRLIEQEKQLYEARIRSHIRSTLSPDHRSAAAATHRPFSPNDHVKALADRFVKEGAQDLWNARDGPLTSNPTPNPTPNPTPNLTPTPNLNFLPKHSRAYRSVPEVRNNRVGAHKYRFWRKGSDDSSSGDSESENENELSLKTGSSASLGEYDVKREKRVVPKTSEEVEFIRHELNKRKLRQNEEQESEKQHSYESILSNTRFDECGISPQTVKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMSSKTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYIDTVGMGCVETPVKVKQSYLVAPHESHFQLVHHILREHILQTPNYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVVQVGIPSDREQYIHRLGRTGREDKEGEGLLLIAPWEEYFLDDIKDLPLQEFPLPDIDPHAKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTVAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04328 725 SMART ultradead3 275 486 IPR014001 -
Phac2g04328 725 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 256 284 IPR014014 GO:0003724
Phac2g04328 725 CDD SF2_C_DEAD 485 618 - -
Phac2g04328 725 MobiDBLite consensus disorder prediction 126 142 - -
Phac2g04328 725 Pfam Helicase conserved C-terminal domain 503 607 IPR001650 -
Phac2g04328 725 MobiDBLite consensus disorder prediction 175 200 - -
Phac2g04328 725 Gene3D - 220 471 IPR027417 -
Phac2g04328 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 626 IPR027417 -
Phac2g04328 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 654 IPR001650 -
Phac2g04328 725 SMART helicmild6 528 609 IPR001650 -
Phac2g04328 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 470 IPR014001 -
Phac2g04328 725 MobiDBLite consensus disorder prediction 117 161 - -
Phac2g04328 725 Pfam DEAD/DEAH box helicase 280 458 IPR011545 GO:0003676|GO:0005524
Phac2g04328 725 PANTHER RNA HELICASE 217 654 - -
Phac2g04328 725 Gene3D - 480 705 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04328 Phac-Chr2 41665217 41669895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04328 238 638 Eukaryotic Initiation Factors Gene Family AT1G72730 27.670 5.14e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04328 - - vun:114177584 1293.1