Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04310 ATGGACTGGAATCTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTTTAGAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGGCAGGTGGGGAATTCTGGCATAGAATCAGTGTTGACCAAGAACAAAGATGCTGTAGGAGTCTCCAAGATGACATCCTCATCTTCTGGGTCATCTAAGAGAGCTCGTGCCCTTGGCAACGGGACACAAACAGTGTCATGCCTTGTAGATGGGTGCAACTCTGATCTCAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTCTGCGAAGTCCATTCCAAAACTGCACAAGTCACAATTGGGGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCATCCACTACTGTGATGAATCCAACATGGGGTGGAATTGTTGCTTCTGGTGATGCTAGGCTTCATGGGCACAACCAACAGCACCACAACCAGGGTGAGCTTTTTCTTGGATCTTCTCCAACCGGTTATAAAGAAGGGAAGCAACTGTCCTTCATGCAAGCTGACCACACCCTCAACAACCAAAGCCCACATCTCCCAGGTGGTTCCGTGGGCCAGGCCCAGATGTTTCTGAGGACCGGCCCGTATTCCGAAAGCGGTGGGCTTAGGTGCAAAATGTTGTGCGATAACCTTACAAGCTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCCAATGGTGAACCCGCATTCGATGCAGCCATTGGGCCTGAGCCTGCATGATAATAACAGCTTGGAGGCCGTGGATCCGGTTTTGGGCCTGAATGGGAGTGACCATTCGTCGTCGATGTATAACATAGTTCTAATGGATCCCAGGGGAACGAAGCCCCCTCCACTGTTTCCCTTTCAATGGGAATAG 1149 0.5004 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMFRSKGEFSVDLKLGQVGNSGIESVLTKNKDAVGVSKMTSSSSGSSKRARALGNGTQTVSCLVDGCNSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDARLHGHNQQHHNQGELFLGSSPTGYKEGKQLSFMQADHTLNNQSPHLPGGSVGQAQMFLRTGPYSESGGLRCKMLCDNLTSSVHDSSRALSLLSSPQPHSPGNGLSPMVNPHSMQPLGLSLHDNNSLEAVDPVLGLNGSDHSSSMYNIVLMDPRGTKPPPLFPFQWE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04310 382 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Phac2g04310 382 MobiDBLite consensus disorder prediction 157 179 - -
Phac2g04310 382 MobiDBLite consensus disorder prediction 302 325 - -
Phac2g04310 382 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Phac2g04310 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 345 IPR044817 GO:0003677
Phac2g04310 382 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Phac2g04310 382 FunFam Squamosa promoter-binding-like protein 14 85 155 - -
Phac2g04310 382 Pfam SBP domain 94 167 IPR004333 GO:0003677
Phac2g04310 382 MobiDBLite consensus disorder prediction 302 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04310 Phac-Chr2 41525355 41529144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04310 1 382 SBP-box Gene Family AT5G50670 43.750 1.49e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac2g04310 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04310 - - gmx:100806507 616.69