Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04267 ATGGCAGCTTTTTCATCCCAATACTACCATCCCTTTCTAGTTCACTCCCCAACCTTCTCAATCACTCCTCCCATAAACAAACTCTCTTCTTTGGGTGACCAACAACCCCTTATAAACACCACCACCACCCTTCCTCCTTCTCATTATTTTCACAATACTCTTCATCAGGAAACGTCTCTCAATAGTGTCACTAATCAACAATCTAGCTCCGCTGATCAAACCTCCAAGGCTACCATCACTGACACTGACCCTTCTGTGATAAAAAACCATAGTCCTCAGACATCCATGGTTGTGGACAAGCTCGAAAAAGGTGATGAACAGGTCACTCAAAAGGTGACCCCGGTGCAGAAGAAGAGAAGAGCAAGAAATGAACCTTCCTTGAGCAGCAGCCCCTTGTCAATGGACTCAGCAGAAGGGGCAAAGAAGAAACAAAAGAATAGCAATAGTGGGGATCAAGGAGAAGACAAGCCAAAAGAAGTGAAGAAGGATCAGAAAAAAGGTCCAGAAGATCCTCCAACAGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTAGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTTGCAATGGACTTAGACACCCTCATGAAATTAAATAATGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACTACTAGCAGCTTCCCCACCGCTAATAATGATGACTATCTTTTGGATTATTCATCCTCATCTTTTCTTCAACCCCACAGGCCAAATGCCTTCTTTGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCACCGATAACACTGGCTCTTTCAATTAA 1077 0.441 MAAFSSQYYHPFLVHSPTFSITPPINKLSSLGDQQPLINTTTTLPPSHYFHNTLHQETSLNSVTNQQSSSADQTSKATITDTDPSVIKNHSPQTSMVVDKLEKGDEQVTQKVTPVQKKRRARNEPSLSSSPLSMDSAEGAKKKQKNSNSGDQGEDKPKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDFAMDLDTLMKLNNAASPSLLPCVEQCRPNQAIAFADTTTLTTTTSSFPTANNDDYLLDYSSSSFLQPHRPNAFFEYNGGQIWEVDQRQKFLHPYGFTDNTGSFN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04267 358 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 64 280 IPR024097 GO:0006355
Phac2g04267 358 SMART finulus 190 240 IPR011598 GO:0046983
Phac2g04267 358 MobiDBLite consensus disorder prediction 61 192 - -
Phac2g04267 358 MobiDBLite consensus disorder prediction 61 96 - -
Phac2g04267 358 Pfam Helix-loop-helix DNA-binding domain 188 235 IPR011598 GO:0046983
Phac2g04267 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 234 IPR011598 GO:0046983
Phac2g04267 358 CDD bHLH_AtBPE_like 174 259 - -
Phac2g04267 358 Gene3D - 181 252 IPR036638 GO:0046983
Phac2g04267 358 MobiDBLite consensus disorder prediction 138 192 - -
Phac2g04267 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 250 IPR036638 GO:0046983
Phac2g04267 358 FunFam Basic helix-loop-helix transcription factor 181 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04267 Phac-Chr2 41155320 41158378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04267 127 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 61.486 9.24e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g04267 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04267 - - pvu:PHAVU_002G283100g 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g04267 2 41155320 41158378 Phac2g04267 2 41155320 41158378 ECH