Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04250 ATGATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGCTTCATGGTCAAGCCCAAACGCCAACGAACTAAGCTTCTTCTCATTGTGTGCCTACAAACCCATTCCTGAAATCCATGAAGAATGGCACGTGCCCAACAACACCACCCAGAACCACTCACATATTAGAGACATGCCCTTCTCCACCAACTTCGCTGATAACATGTTACTCCAACAACACCAACCATTGCACACTTTCTCTTCTTCCACTAACCTTGACCTCTCTCAAGGGCTCAACTCCCTCACTCCCAAACCCTCCTTTTACCCCTTGGAGCATGGCTTTCGCGCGGCTTCCGATGTGGGACTTCTTGACCCTCAAGCTTTGAACAAGGTTCATCATGGCGGTGTCTTATTCACCTCAAATGGCAATAACCAGTTAGCCCTTCCAAATTTAGCAACCATGTGTGCAATGCCTCCCCTTCAAGATGGTGTTGGATTTTCGGGATTCAAGAATATTGGTGACTCTGATCATGCGGAGGGTTCAAGAAAGGCCTTACTGAGACCCCTTGAATCGTTCCCTCCATCAGGTGCACAACCAACACTTTTTCAGAAGCGAGCAGCACTAAGGAAAAGCTTGGAACATAACCTCAAAGGCAAGAGTAAAGGGAATAGTGAAAGTAACAAGAGGAAGACGTGTAATAATGGAGAAGGTGTTGAATGGTCGGGGTTGAATTATGATTCTGACGAGAGTGATGAGAATAAGACGGTGGAAGAGAGTGGAAGGCACGGTGGAAACAGCTCGAATGCGAATAGCACCGTCAATGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGTATACCTGCGAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGATCCGTTGTTCCCAATATTAGCAAAATGGATAGGGCTTCAATACTTGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAGGATCGGTGACCTTCACAATGAATTGGAGTCAACACCACATGCTGGCTCTTCATTGACTTCAAGCTTTCTTCATCCTTTGACACCCAATTTACCAACACGTATGCAAGAAGAACTTTGTCTCAGTTCATTGCCAAGCCCTAATGGCCAACCTGTGAGGGTTGAGGTTGGGTTGGGTGAAGGAAGAGGAGTAAAGATTCAGATGTGTTGTGAGCGGAAACCTGGTCTCTTGCTGTCCACCATGAGGGCTCTTGACAACCTTGGCATAGACATTCACCAAGCAGTCATCACCTATTGCAATGGCTTTGCTATGGATATTTTCCGAGCTCAGCTACGCAACGAAGGTCAAGATGTCCATCCAGAGCAAATCAAAGCAATTCTATTAGATTCAGCTGGCTTCCATAGCATGACCTAA 1407 0.4634 MMSGWMQDTEEQNSASWSSPNANELSFFSLCAYKPIPEIHEEWHVPNNTTQNHSHIRDMPFSTNFADNMLLQQHQPLHTFSSSTNLDLSQGLNSLTPKPSFYPLEHGFRAASDVGLLDPQALNKVHHGGVLFTSNGNNQLALPNLATMCAMPPLQDGVGFSGFKNIGDSDHAEGSRKALLRPLESFPPSGAQPTLFQKRAALRKSLEHNLKGKSKGNSESNKRKTCNNGEGVEWSGLNYDSDESDENKTVEESGRHGGNSSNANSTVNGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAVEYLKELLQRIGDLHNELESTPHAGSSLTSSFLHPLTPNLPTRMQEELCLSSLPSPNGQPVRVEVGLGEGRGVKIQMCCERKPGLLLSTMRALDNLGIDIHQAVITYCNGFAMDIFRAQLRNEGQDVHPEQIKAILLDSAGFHSMT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04250 468 MobiDBLite consensus disorder prediction 208 282 - -
Phac2g04250 468 Pfam Helix-loop-helix DNA-binding domain 287 329 IPR011598 GO:0046983
Phac2g04250 468 MobiDBLite consensus disorder prediction 1 20 - -
Phac2g04250 468 FunFam BHLH transcription factor 275 344 - -
Phac2g04250 468 CDD bHLH_AtAMS_like 283 354 - -
Phac2g04250 468 SMART finulus 286 335 IPR011598 GO:0046983
Phac2g04250 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 350 IPR036638 GO:0046983
Phac2g04250 468 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 465 - -
Phac2g04250 468 CDD ACT_UUR-ACR-like 397 457 - -
Phac2g04250 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Phac2g04250 468 Gene3D - 272 345 IPR036638 GO:0046983
Phac2g04250 468 SUPERFAMILY ACT-like 394 467 IPR045865 -
Phac2g04250 468 MobiDBLite consensus disorder prediction 254 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04250 Phac-Chr2 41086313 41089865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04250 174 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 59.206 8.07e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g04250 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04250 - - var:108344591 764.607