Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04246 ATGCATTTCGCGAATCTCGATGACACTCCGATGTTCCGCCAACAGATGCAGTATTTGGAGGAAGGTGCAGAATCGTTGCGCGCGAGGTGCTGCAAGTTCTATAAAGGATGTCGAAAGTACACGGAAGGTCTTGGAGAGGCATGTGATGGGGACATCGCATTTGCAAGTGCCATAGAAAACTTTGGAGGAGGGCCCAATGATCCTCATTTTATTGCTTTAGGAGGACATATTATGACCAAATTTACTATAGCATTGAGAGAAATCAGTACATTCAAGGAACTGCTCCGGTTACAAGTAGAGTACATTTTCAATCGTCGGTTACAACCCATTGTCAGTGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAATCCTCCCTAGTATACGATCAGGCGCGTGAAAAATTTATGTCACTGAGAAAAAGTACTAAGATTGACATTGCCACTGTCATTAAAGAGGAACTGCAGGAAGCAAGAGCATCATTTGAGGAAGCCCGATTCAATTTGGTTGCCACTCTTAATAACGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACCAGAATTATGGATGCTCATTTTCGATACTTTCAACAGGGGTATCAGCTATTGAATCAGATGGAACCTTTCATTAATGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTACAATAGCGAGCAGATTCAACTTTATCAAAGGATGCAAGACTACAAGAAACAAGCTTATGAAGAAAGTAGGTTTTCCTTGAGTGGTCCTTACGGTTCTCCTCGTGTAGACTTTGCACATCCATTTTCTAGGATATCAAATGAGGTGGCAGATATAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATCATTCGGCAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTGTTCTCGACAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCGGGTCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACTGAAAATGGTTCTGGAATTCTAAGTCGTTGGCTTTCTTCTCATTACCATGGAGGTGTCTATGATGAAAGATCTATTGCACGTCATACAGTGAACCTGCTGACATCAAAAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCCAGCTTGTTGAATGTCCAGTCACTGGAAACGCCTCTCTCAGCTGACTCAGAAAACGGCAACTCTCGCTCTGATGACAATATTGATAAGTTAGGAAGTTATCCAGATGATGATCATGCTTTGAGAGTGGAGTCTCCATTCAATAATTCCACTCGTAATAACCACTTAAGTTTGTCTAAAAGTATGTACATACATACACACAGTATGAGAATTCAAAAGCCAATTGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGCTCTGGTGTTCATCGTAATCTTGGTGTACATGTATCAAAAGTGAGATCGCTGACACTTGATGTTAAAGTTTGGGATTCCTCTGTCTTAAGTATGCTTAAATCTCTTGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGTTGTTGCATTCAGGGGGTAATTTGCAAACTGATGACACCCTTGCTAGTTCATCCAAGGAAACGGGAGAGGAGATCTTCCATGCAAGAAAGCCAAAACATGACGATCCTATTTTGTTAAAGGAAAGGTTCATTCACGCAAAGTACTGTGAGAAAACATTTATTCAGCGGATCACGAAAAGCCACCCTATCCATTCACTAGAGCAACAGGTGCAGGAAAGCATCTGTGCAAATGACAAGAAAGCAGTGTACCAGCTTATTCTTAAGTCGGATGTTGACCTCAATGCCATCCGTTGGCAATCATTGTCTGGTGACTCTTTCAACATGGCATCTGAAAGCGAAAATGAGGTCGTTGAGGACGTGAAAGATGGCTCTAGCGTGCTTCACTTGGCTTGCCTAACTGGTGACATTGGCATGGTGGAGCTACTCCTACAGCTTGGGGCAGATATAAATGCTTCTGATTCTAGAGGTCGGACACCACTTCATTGTTGTATTCTTAGAGGACAGACTGCAGCTGCAAAATCGCTTATCTTGAGGGGAGCCAATATATATATCGCAGATAAAGAAGGCAACACTCCTGTGAAGCTTGCATCAGAATCCGGCTGTTTTGACACTGAAATTATAAAACTCTTGACAAGCAGATAA 2391 0.4166 MHFANLDDTPMFRQQMQYLEEGAESLRARCCKFYKGCRKYTEGLGEACDGDIAFASAIENFGGGPNDPHFIALGGHIMTKFTIALREISTFKELLRLQVEYIFNRRLQPIVSVDIHEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVIKEELQEARASFEEARFNLVATLNNVEVKKRFEFLEAVTRIMDAHFRYFQQGYQLLNQMEPFINEIMDYVHQSRENYNSEQIQLYQRMQDYKKQAYEESRFSLSGPYGSPRVDFAHPFSRISNEVADIVMESAANGKVQIIRQGYLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWSGSYGSNQPSPKRNSGTENGSGILSRWLSSHYHGGVYDERSIARHTVNLLTSKIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMQKINGVIASLLNVQSLETPLSADSENGNSRSDDNIDKLGSYPDDDHALRVESPFNNSTRNNHLSLSKSMYIHTHSMRIQKPIDVLRSVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHVSKVRSLTLDVKVWDSSVLSMLKSLGNLFANSVWEELLHSGGNLQTDDTLASSSKETGEEIFHARKPKHDDPILLKERFIHAKYCEKTFIQRITKSHPIHSLEQQVQESICANDKKAVYQLILKSDVDLNAIRWQSLSGDSFNMASESENEVVEDVKDGSSVLHLACLTGDIGMVELLLQLGADINASDSRGRTPLHCCILRGQTAAAKSLILRGANIYIADKEGNTPVKLASESGCFDTEIIKLLTSR* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04246 796 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Phac2g04246 796 CDD BAR_SFC_plant 15 215 IPR035670 -
Phac2g04246 796 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Phac2g04246 796 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Phac2g04246 796 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Phac2g04246 796 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Phac2g04246 796 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Phac2g04246 796 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 644 IPR001164 GO:0005096
Phac2g04246 796 PANTHER CENTAURIN/ARF 5 794 IPR045258 GO:0005096
Phac2g04246 796 SMART ANK_2a 738 767 IPR002110 GO:0005515
Phac2g04246 796 SMART ANK_2a 705 734 IPR002110 GO:0005515
Phac2g04246 796 SMART arf_gap_3 499 644 IPR001164 GO:0005096
Phac2g04246 796 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Phac2g04246 796 CDD ArfGap 502 631 - -
Phac2g04246 796 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 645 - -
Phac2g04246 796 Pfam Putative GTPase activating protein for Arf 502 638 IPR001164 GO:0005096
Phac2g04246 796 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Phac2g04246 796 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Phac2g04246 796 Pfam Ankyrin repeats (many copies) 707 758 IPR002110 GO:0005515
Phac2g04246 796 SMART PH_update 293 430 IPR001849 -
Phac2g04246 796 ProSiteProfiles Ankyrin repeat region circular profile. 705 736 - -
Phac2g04246 796 Gene3D Arf GTPase activating protein 480 644 IPR038508 -
Phac2g04246 796 SUPERFAMILY Ankyrin repeat 658 794 IPR036770 -
Phac2g04246 796 Pfam PH domain 294 427 IPR001849 -
Phac2g04246 796 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Phac2g04246 796 MobiDBLite consensus disorder prediction 439 458 - -
Phac2g04246 796 SUPERFAMILY PH domain-like 293 445 - -
Phac2g04246 796 Gene3D - 658 796 IPR036770 -
Phac2g04246 796 Coils Coil 227 247 - -
Phac2g04246 796 Gene3D - 285 439 IPR011993 -
Phac2g04246 796 CDD PH_ACAP 295 432 - -
Phac2g04246 796 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Phac2g04246 796 ProSiteProfiles Ankyrin repeat region circular profile. 738 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04246 Phac-Chr2 41043103 41061705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04246 505 641 C2H2 Transcription Factor Family AT4G21160 39.716 4.43e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04246 K12489 - gmx:100792517 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g04246 2 41043103 41061705 Phac2g04246 2 41043103 41061705 ECH
Phac2g04246 2 41043103 41061705 Phac9g02685 9 25503028 25511896 PCT