Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04239 ATGCCTTTTCAAATCATGGATCACAGGGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGACTACGGAAACCAATATCCATTAATGACCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGCAGCATTTTGAACAGTACACCACCCCTTGATGTAAATGCAAAAGCTGGTTTGCTGATGTCCCAGGCTAGTCTACCTGGGAATGGTATAGATTCCAAGGAATCATTGAATTATTGTCCCAAATCATTGTCTGATGCATCTCTGCATTCGGCACCTATCTCATATGGTTTAATTGGGAACAAGATTGTGACCAGTGCTGCCCCCTGTGAAAGTAGTTTATTCTCAAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTGTTTGGAAATGATGTTCAGTCTGATCAGTCTATTACTGCTGGTTTTCCTGAGGAACCATATAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCCGATGAAGAGGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATGATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTCGAAACATTAATAGCTATGTAGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTGAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCTGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAATCTGCCCTTCGTGCTTTGAATAAGATGGACATTGCTGGAAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCTCATAAGGGGCAAGATGAGCGAGATTTTGGTCAAAGTATTATGGACAATTTACCATTAAGACCAAAGGCATCAGGGTCTTCTGGAGTAATTGGATCTGGTTGCTTGGAAAATGGATATAACCAGAGGTTTCAATCTACAGTGCGGCAACCTATTAATGCATTTATGGATAATGCATTCATTAATGTGAACTCTGGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAAGTGTCTGGAGTTTGTGAGTCTAGTGGCTATGTTGATGCTATGAAATTTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCATGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAAGCCTCTGATGGTAGGCATATTCAGGGAATGGGCTCAACTGGGAACATAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATGGACTTTATCATATGTGGAACAGCTCTAATTTGCAACAGCAACCTTCATCTAGTAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCGAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGGCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGTTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCGTCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACGTCCAATGCTGGACAGAACTCTCCTAAGCAGTTGTCCCATGTTTTCCCTGCGAGACATCCCATGACTTCAATGTCAAAATTTGATGCTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAACAATGTTGATAAGAAGCAATATGAACTTGACCTAGGTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCCAACAAGTATGTTAATTGCCACCACAGCTTTTTGAATCTTCTTTTTGCTTAA 2403 0.4124 MPFQIMDHRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNSTPPLDVNAKAGLLMSQASLPGNGIDSKESLNYCPKSLSDASLHSAPISYGLIGNKIVTSAAPCESSLFSSSMSEIFSRKLRLFGNDVQSDQSITAGFPEEPYKSLKEMEADTIGNLLPDEEDLFSGVVDELGCSSHAKTNDDFEDFDLFSSGGGMEMEGDEHLSSGKMMNGLDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSYVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKMDIAGKQIKLEPGHPSLMHQSHKGQDERDFGQSIMDNLPLRPKASGSSGVIGSGCLENGYNQRFQSTVRQPINAFMDNAFINVNSGIHNTVRGASAGKVSGVCESSGYVDAMKFASSSRFHPHSLPEYHDSLANGSPYNFSSTISNLANNIGAGATEASDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSNLQQQPSSSNVLWQKSPSFVNDACSPSLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERANSYLGGSPDASGFRLGSLGSGGFHGSWQLRPLDFPSHNVFSHVGGNGTELTSNAGQNSPKQLSHVFPARHPMTSMSKFDATNERMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYVNCHHSFLNLLFA* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04239 800 Gene3D - 336 429 IPR012677 -
Phac2g04239 800 FunFam Protein MEI2-like 1 336 428 - -
Phac2g04239 800 Gene3D - 246 335 IPR012677 -
Phac2g04239 800 CDD RRM1_MEI2_like 251 326 IPR034453 -
Phac2g04239 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Phac2g04239 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Phac2g04239 800 PANTHER RNA RECOGNITION MOTIF-CONTAINING 48 786 - -
Phac2g04239 800 SMART rrm1_1 253 321 IPR000504 GO:0003723
Phac2g04239 800 SMART rrm1_1 338 406 IPR000504 GO:0003723
Phac2g04239 800 FunFam MEI2-like protein 5 isoform 2 241 335 - -
Phac2g04239 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Phac2g04239 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Phac2g04239 800 SUPERFAMILY RNA-binding domain, RBD 249 408 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04239 Phac-Chr2 41002122 41010585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04239 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.767 9.02e-09 57.0