Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04129 ATGGGCAGAGAAAATGATTTAGCAAGGACAAAGGAAGAAGTCAGTGATGATGGTTCCTCGACGGTTGAGAATGGGGATTTAGAATCTCATGCTCGAATTAGTCTGGACAAGGAAGGCTTGGAAACTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCGGCGCTAGAATTTCTGGGTATCACCCCAGGTTCAGAATTGTGTAAAAGCAAGGGGGAAGTAGGGTGTGATGGCAATGGAATTCCCAGAAATATGTCTCTTAACAGAAACATTGAAAACAATACAGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAAAGCGATTTGGAACTTGGTTTGTCTCATCAAGATAAACTAATTGAACTGGGATGTTCTTGTAAAAACGATCTTGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAGTTTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCTAGTGGTGATCCTGGTCTCGCACAAGCTCGTGCAAATGCTGGTGTGGATCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTAAGTGAGATTGCGCTATGGTTTTGTCCTCATAATAGCAGTACCAATAACAACGTTAGCAATGTGGACACACTTTCACAGGTTGCTTCTGAGCAGCCTTTGAGCATTGTTACTGAAGATGTTGTCCCTGTACAGAATACTGCAACTAAATGGGCCGTGGAGGGTACAGGTATCCTGCTTGCTACGGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCCCCTCGTGTTGGAAAGAAAACTGCTAGAAGTGGTCTTCATATCTTACTTGGAGGGGTATGTGCTTTAGCAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTGGTCTTCGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATGA 1083 0.4386 MGRENDLARTKEEVSDDGSSTVENGDLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGSELCKSKGEVGCDGNGIPRNMSLNRNIENNTGMVEFVSPDGEVFICKSDLELGLSHQDKLIELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGALKEYEVLRERTASGDPGLAQARANAGVDPDAVAAIRRQRLSEIALWFCPHNSSTNNNVSNVDTLSQVASEQPLSIVTEDVVPVQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04129 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Phac2g04129 360 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Phac2g04129 360 SMART ringv_2 112 162 IPR011016 GO:0008270
Phac2g04129 360 MobiDBLite consensus disorder prediction 1 18 - -
Phac2g04129 360 Pfam RING-variant domain 125 161 IPR011016 GO:0008270
Phac2g04129 360 PANTHER ZINC FINGER, RING-CH-TYPE 16 327 - -
Phac2g04129 360 MobiDBLite consensus disorder prediction 1 30 - -
Phac2g04129 360 SUPERFAMILY RING/U-box 125 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04129 Phac-Chr2 40433276 40438549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04129 1 350 C3H Transcription Factor Family AT5G08750 64.543 7.85e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04129 - - gmx:100805323 598.586