Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04113 ATGGCTAACAACAAGAGCTCCAAGAAACCAATAAGTCTGAATGACAGTCACTATCGCTTCCTCGAAGAACATTCTGCTCCTCCCAAACCCTCTTCCAAACCTTTCGATGATGAAGAATCGATCGAATCCTCCACGCCAAAACAACAACACCAAAACATTCCTCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAGCATCGGACGACAAACAAGAACCGATCAAGGTACATGAAGCACAACAAGTTGTTGCTCCGTCCTACCATATTTCTACTACTAGGTGCAACTTAGACAAGAAACACGAACCGACCATCTTTCGAGAAGAAGAACAGGAAGAAGAAGATTCACCCAACGTGGTTAGTTCTTCCCCTGGGCAAAACTCCGATGAGAAACACGAACCGATATCTTTTGAAGAAGCTCCACCCGACGTGGTTGATTTTTCCCCTAAGGAAGAAAGGACGACGAAGGTGAAAGTTCAGGGGCGGCGCCGCCTCTGCAAGATTGTGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATCAGTTCAATTTTGATGAACTGATCGACCTTGATTCGCCGATTCCGGTGCCAAGAAACGTCATCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAAGGTAAAGAAAGATATGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCATCAGGAGAGCTTGTCTGAGGGTAATAAGAATGATGGTGGCGACTGTATTGAGTGTGATTCAGAGGATTCTGTTAAAGTGGTGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTCTGACGGGTCCTAGATCAACTTATCAGCTGCCTGCTAAAATTGCAAAAATGTTGTTTCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTACATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATCTGTAGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCAAGAATACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTGCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACTACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAATAATTATTTAGATGACGAGGAAAGTGAAGATGACGCTACTTGGGACTACATGATACTGGATGAGGGGCACCTTATAAAGAACCCAAACACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCGCTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTTTGTTGCCCAGAGTTGCTTGGTGACAACAAATGGTTTAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGAACGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTATTCAGTCCAGATGATGAGAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCGTTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGCTCACCACTGGCTGCCCTTACGATTTTAAAGAAAATATGTGATCATCCACTTTTGTTGACGAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGCTGATGTTGCAACAAAATTGGCAATGCACATAGCCAATGTTGCTGACACAGATAGGTTTAGAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGCGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTACTATCCCAAGGTTATGACTTTTTACGAATTGATGGAACAACAAAAGTCAATGACAGACTAAATATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTAGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTTGACCGTGCTTATCGAATTGGTCAAAAGAAAGATGTCATTGTATATAGACTGATGACGTGCGGAACTGTTGAAGAAAAGATCTACCGGAAACAGGTATACAAGGGAGGATTATTCAAAACGGCTACCGAACATAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAACTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGACCGTCAATATACATTTGATGACTCTTTCAAAGCACACATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGACAGGGCCGCCGGTTGGTGCTGAACTTGAGGATGATGAAGTTACAAGGAATTATGGGACTAGATATATTGGGACTTCAAGATCATCATCAAATGACAATATTACTTATGGCTCCGAGTTTGCATTTAATCCTAAGGATGTTTCCACAAGCAAAAAAGGTTCTTCTCCTATCAGTGCTAGTAAATTGACCGAGTCAGATATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTGCTAAATTACCTGACAAGGGTGAGAAACTGCAGAAACGGCTTGAGGAACTGAGTTTAGAGCTGGCTGAACTAAGAAGCGAAAGAAATGTGATTGATTTGGATGCATTTACCACTGAATTTCAACAAGGGTTGAATGTATAG 3078 0.422 MANNKSSKKPISLNDSHYRFLEEHSAPPKPSSKPFDDEESIESSTPKQQHQNIPQFSAITDFDSPIGLASDDKQEPIKVHEAQQVVAPSYHISTTRCNLDKKHEPTIFREEEQEEEDSPNVVSSSPGQNSDEKHEPISFEEAPPDVVDFSPKEERTTKVKVQGRRRLCKIVHEDAGKSVAVDQFNFDELIDLDSPIPVPRNVIQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGKERYDDEGLEYGSAGSSFSPHQESLSEGNKNDGGDCIECDSEDSVKVVDNFVPENDGSITLTGPRSTYQLPAKIAKMLFPHQREGLTWLWSLHCLGKGGILGDDMGLGKTMQICSFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSKNTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYLDDEESEDDATWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRVGSSVAKELRERIQPYFLRRMKSEVFSPDDEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEADVATKLAMHIANVADTDRFRDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIQECLLSQGYDFLRIDGTTKVNDRLNIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTFDDSFKAHIEFLKSQGIAGVSHHSLLFSKTGPPVGAELEDDEVTRNYGTRYIGTSRSSSNDNITYGSEFAFNPKDVSTSKKGSSPISASKLTESDIKDKINRLSQTLSNAAMIAKLPDKGEKLQKRLEELSLELAELRSERNVIDLDAFTTEFQQGLNV* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04113 1025 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 679 838 IPR001650 -
Phac2g04113 1025 Pfam Helicase conserved C-terminal domain 676 788 IPR001650 -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 45 59 - -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 110 154 - -
Phac2g04113 1025 PANTHER SNF2/RAD54 FAMILY MEMBER 101 1002 - -
Phac2g04113 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 852 IPR027417 -
Phac2g04113 1025 Pfam SNF2-related domain 336 626 IPR000330 GO:0005524|GO:0140658
Phac2g04113 1025 Gene3D - 301 577 IPR038718 -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 1 76 - -
Phac2g04113 1025 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 506 IPR014001 -
Phac2g04113 1025 Coils Coil 986 1013 - -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 15 44 - -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 133 154 - -
Phac2g04113 1025 Gene3D - 578 873 IPR027417 -
Phac2g04113 1025 SMART helicmild6 705 788 IPR001650 -
Phac2g04113 1025 SMART ultradead3 314 517 IPR014001 -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 236 250 - -
Phac2g04113 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 556 IPR027417 -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 236 272 - -
Phac2g04113 1025 MobiDBLite consensus disorder prediction 256 270 - -
Phac2g04113 1025 CDD SF2_C_SNF 668 799 - -
Phac2g04113 1025 FunFam Protein CHROMATIN REMODELING 24 298 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04113 Phac-Chr2 40299599 40308273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04113 302 838 RAD5 or RAD16-like Gene Family AT3G16600 24.382 4.70e-26 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac2g04113 SNF2_N 1.7e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04113 K20093 - gmx:100779283 1659.43