Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04093 ATGAACGAATCTCAAAACACCATTCCTCCCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGCAACCTCACATGTCCAGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCCTATTCGACCCTGCCAACCCAGAAACTTCAACTATTGACTCCTTAGCTTCTCTCAAGCGCAACCTTGAATCCCATGAAAGCAGCTTAGAAAACAAGCTCCAAGCACTCAGGAAAATCAGTCTCTTGTCTGATGAGTATTGCTCCTTTAACAAATCATGCTTCCTCCAATTGGACTTCTTACCGCTGCTTTTGGAACTAGTTTTTGGAACTCAAGTATCAATAAATCACATGAACTTCATTGAGCTAGCACTTTGCTGCATTCAGAAATTGCTGCCACTTGTTAGTTTGGAGCCTCTAAACATGATAAAAGATGGGTCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCATCGTCATCGGAGACAGAAGATCTATGCTATATTCTTGGAAACTCTCCCGAACTAGTGCACGAGATTGTTCAAGTTGTTAACCAAAATTACGAAGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTATGTTCGTTTCAATCCAACATAGAGAGTTTGGTGAGAGGAGGAGCAATAGATGGTATCATGAGATACATCTCATCAGAAAGAAGAACCATGGCCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGCGCTGGAAACTGCTAAAGTGGCATTGGTGAATCACCCCAATGGTGTTGGTACTTTGGTTAATATGGTCTTCAAGGTATCTGATCAAGAATGCAGTGAAAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGAGAGACAGCCATTGAAAGTGGAGTTTTGACTCGGTTGTTATTGCTCCTGCAGAGTCAGAGTAGTAACAAAACAAAATCAAAGGCAAGATTGCTACTCAAATTGCTAAGATCAGAGTCCAAGCAGGGTTAG 1173 0.4263 MNESQNTIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTIDSLASLKRNLESHESSLENKLQALRKISLLSDEYCSFNKSCFLQLDFLPLLLELVFGTQVSINHMNFIELALCCIQKLLPLVSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASSSSETEDLCYILGNSPELVHEIVQVVNQNYEVSGDAIKAMSALCSFQSNIESLVRGGAIDGIMRYISSERRTMAPLAVRTVEKLMALETAKVALVNHPNGVGTLVNMVFKVSDQECSESAVEVLLVVCGEFERARETAIESGVLTRLLLLLQSQSSNKTKSKARLLLKLLRSESKQG* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04093 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Phac2g04093 390 Gene3D - 185 389 IPR011989 -
Phac2g04093 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Phac2g04093 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Phac2g04093 390 SUPERFAMILY ARM repeat 96 383 IPR016024 -
Phac2g04093 390 CDD RING-Ubox_PUB 9 56 IPR045210 -
Phac2g04093 390 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Phac2g04093 390 Coils Coil 94 118 - -
Phac2g04093 390 SUPERFAMILY RING/U-box 4 76 - -
Phac2g04093 390 PANTHER WDSAM1 PROTEIN 6 388 IPR045185 GO:0061630
Phac2g04093 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04093 Phac-Chr2 40181061 40183174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04093 8 384 U-box Gene Family AT1G49780 30.179 3.44e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04093 - - vum:124836871 657.136