Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04078 ATGGACACCAACCAGAACACCACCACTAGTGCATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACTAATGAACAACAACAACATCATCATGACCATGACCATATTATTCTCCAAGTCCAAGACCCTCTGGCTTCTGGGATTTGGCCCAATAATTACCCCCACAATCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCTCAACAACCTCATCCATAGTACCACCACCCTCCTCCTCCTCCTCAGGGTTCCTTGGAGACATACTAGGTGTTCACAGCATGGAAGAAGATGAAGAACCAGAAGAGGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCCGTGGACATCGACCCCGCCACCATCCGTAAGCCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGAGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTCCAATCCATTCCTCACCCTTCCCAACCACCACAATGCATTGGTTTTGCCACCACAAATGCTAACACCTTGCTATTAGCCCCTTCTTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACAGCTGTAACCGCAGCCACGGCCTCTTCCTCCTCCCTGGACATGCCGGGCGGACTCGGATTCGACGGCCGCGGCCACGCTTGTGACGGCTCCTCCAGCTTTAACCAGCATGAGGTAATCAGTGAATAA 846 0.5047 MDTNQNTTTSAFTNVNTTWNLEKMETNEQQQHHHDHDHIILQVQDPLASGIWPNNYPHNHNPNLLQMHQTPPSTTSSIVPPPSSSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNANTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSLDMPGGLGFDGRGHACDGSSSFNQHEVISE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04078 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 201 IPR036638 GO:0046983
Phac2g04078 281 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 230 IPR045843 GO:0003700|GO:0006355
Phac2g04078 281 Pfam Helix-loop-helix DNA-binding domain 152 191 IPR011598 GO:0046983
Phac2g04078 281 FunFam BHLH transcription factor 145 207 - -
Phac2g04078 281 SMART finulus 148 197 IPR011598 GO:0046983
Phac2g04078 281 Gene3D - 145 203 IPR036638 GO:0046983
Phac2g04078 281 CDD bHLH_AtIND_like 143 200 - -
Phac2g04078 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04078 Phac-Chr2 40043308 40044777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04078 111 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 81.720 1.21e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g04078 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04078 - - gmx:100775296 383.645