Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04072 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTTGACTCACTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGACTCTAAAAGGTGTGGTTGTGATTATGGTGACATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAAAGGAGGGAACGTTTTCTGCAAGATTTGGGTTTAGACTATGCTTCTTCTTCGGAGGTTTGTTATCAAGAGAGAATGAACTTTGATGACTCATCCATCAGTTTGGGATTTGAGAGGATCAGGGAGTGCAGTGGAGCAATCTCGAATGCTTCAATTTCGCATAACGATCAAGTATCTGAGAAGTCGGTTCTCACTGGAGGCAAAGCAGCTTCTGAAGCAAAAATCTCACTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAAGCAGATGCAAACTTTGAAGGAAAAGAGCATGACTTCGCTTCTACAAATCAGGAGCACAGAGAAGCTGATGCCCAAGAATTTCAGGATTTTGATATGGGTAAAAGGAAAAGGAAAAACTGGTGGAAACGCTTTGTGAACGAGAGGAAAGGGGTTGAAGGAAATGCTAGATCAAAATTTAATGCGGGGGCAAATAAAAATAGAAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTTAGTGGCCTATTCATTGGACAAGAGGTTAGAGCTCACAAAGGTCTAATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCCAGTGGAGGTGAAGATGGTGTTGTTCGCATATGGCGTGTTACATCACTGGATAAATCAAGTATTTGTTTCACCTCAAAAGACAGCACTTCTAATTGCAAAGTGGAATGTAAAAACACTACTCCTAAGAAGAAAAACTCATGCCAACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTTTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTCTCCTCTTCTATGGATAAAACTGTTCGTTTATGGCAAATTGATTGTAATCAAAGTCTTAGTGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCAATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTCATTGACTGGGCAAATATACGAGATGTCATAAGTGCTATAAGTTACCAGGAAGATGGGAAAGGATTTATAGTTGGTTGTGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTATGTGGTAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAGTTGCCAGAGAATTATGATCACAACAGAAGATTCCAAAATTCATATTTATGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCCAAAGTCAGGAAGTCAAATGTCGGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCTCATGTTTACATTTGGAACTTGGATGACTTGGGAAATGCTTCTCCTAAACACACAAAATCTGAACGCTCATGTGAGTACTTTTTTTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGATGTGAAAGCATATCAAAGGGGTTCTAGCAGTAACTTTTCCCACCATTCTTCAGAAATGCAAAACCAATCAGAGATTGCTCCTGAGATCAGAGATCCAGATCGTTTTTCTCTTGGTAATTGGTTTGCCATTGATGGCACATGCCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCTAGCTGGGATTTACCTATAGCAGAAGATAAATATGATGAGCAGCAGTTATGTCACAAAAATACTTGCCAAGACAGAATTGTGTCAGAAACATGGGGGCTATCAATTGTGGCGGCTGCTTGTGATGGAACTATTAAGACATTCCACAACTTTGGATTACCCATTAGGTTCTAA 2022 0.4001 MLGSDDGDIDVFFDSLDSLSAQDSVLAKEEFDSKRCGCDYGDIWVKEPVSVKERRERFLQDLGLDYASSSEVCYQERMNFDDSSISLGFERIRECSGAISNASISHNDQVSEKSVLTGGKAASEAKISLDEVKGCPQGEADANFEGKEHDFASTNQEHREADAQEFQDFDMGKRKRKNWWKRFVNERKGVEGNARSKFNAGANKNRRIKVRQNKKRWLEFSGLFIGQEVRAHKGLIWTMKFSPCGQYLASGGEDGVVRIWRVTSLDKSSICFTSKDSTSNCKVECKNTTPKKKNSCQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQSLSVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWANIRDVISAISYQEDGKGFIVGCVTGTCRFYVASGKYFQLEAQIDVCGKKKASGNKITGIQFSQKSCQRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWNLDDLGNASPKHTKSERSCEYFFSKGVTVAIPWSDVKAYQRGSSSNFSHHSSEMQNQSEIAPEIRDPDRFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPIAEDKYDEQQLCHKNTCQDRIVSETWGLSIVAAACDGTIKTFHNFGLPIRF* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04072 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 399 IPR001680 GO:0005515
Phac2g04072 673 Pfam WD domain, G-beta repeat 228 260 IPR001680 GO:0005515
Phac2g04072 673 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Phac2g04072 673 Pfam WD domain, G-beta repeat 353 389 IPR001680 GO:0005515
Phac2g04072 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Phac2g04072 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 350 - -
Phac2g04072 673 SMART WD40_4 222 261 IPR001680 GO:0005515
Phac2g04072 673 SMART WD40_4 310 348 IPR001680 GO:0005515
Phac2g04072 673 SMART WD40_4 483 524 IPR001680 GO:0005515
Phac2g04072 673 SMART WD40_4 442 482 IPR001680 GO:0005515
Phac2g04072 673 SMART WD40_4 351 390 IPR001680 GO:0005515
Phac2g04072 673 SMART WD40_4 392 431 IPR001680 GO:0005515
Phac2g04072 673 SUPERFAMILY WD40 repeat-like 227 663 IPR036322 GO:0005515
Phac2g04072 673 PANTHER WD REPEAT DOMAIN 44 8 670 IPR040324 -
Phac2g04072 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 392 - -
Phac2g04072 673 FunFam WD repeat-containing protein 44 213 556 - -
Phac2g04072 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 357 IPR001680 GO:0005515
Phac2g04072 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 264 - -
Phac2g04072 673 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Phac2g04072 673 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Phac2g04072 673 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Phac2g04072 673 Gene3D - 223 557 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04072 Phac-Chr2 39955405 39961616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04072 314 525 U-box Gene Family AT2G33340 25.328 4.04e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04072 K20241 - gmx:100819135 1113.98