Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04071 ATGGTTAGAGACGATCTCTACATCACGGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGATGTCATGAAATCCCCTGTCAGTCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACGTGTCCCGCCACCATGCAGGTTCTCCAAACCAAAGAATTTGTTCCTAACCGTACCTTACAGAGGCTCATCCAGATCTGGTCCGACTCCCTCCACCACCCACTCCACTCGCCTCACTCCCCTACCTCCACCCACTCCCTATCCCTCCCCTCCAAGAACCAAATCCTCCTCGCTATCTCCGACTTGCAGACTCGCGCCCAGAACCGCGTTGACTCGCTCGCCAAAATCGCGCGGTTCGCGCAAGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGCTGCTGGTTGGCTTCCTGGACAATGTCAATGGCAGCGTCGAGTTCCTCGAACAGGTCGTTACGGCGTTGGATTTGGTTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAACTTGATACTGAAGAGGCAGGGCGAGGGAGAAAAACAGAGCCTAGATTCTCTTTTTATCGCTCTCCAACAAGGGAGCCATGCTGCACAAATAGCATCGGTTAGGGTTTTGACTTCGGTCGCCGTGGACGTGGAATCGAAGCAGTTGATAGCGGAGAGGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCTCGCCGGAGAAAGATCCGGATCTAATTGACAACTGTTTGTCGTGCCTGGTGGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTGGGAGCGGTTAAGGTGTTCTCAAAGCTTCTTTGGGCTTCGAACATGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCCTCTACGAAGGAAGGGAGGTCGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAGGTGCTAAAAGTTTCGAGCGTGGCAACGGAACACGCCGTTACGACGTTGTGGAGCGTGTGTTATCTGTTTCGGGATCAGACGGCGCAAGAGGCCGTTACGAATGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGTGGATTTGCTCAAAATATTTCGGGTTAATTCTAAGTCGTGTCTTTCATCTTATGACACCAAGACCACTCATATTATGCCCTTTTGA 1257 0.5274 MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSPHSPTSTHSLSLPSKNQILLAISDLQTRAQNRVDSLAKIARFAQDSEENRDFLVRTECFVPLLVGFLDNVNGSVEFLEQVVTALDLVIGKMEDREGLKNLILKRQGEGEKQSLDSLFIALQQGSHAAQIASVRVLTSVAVDVESKQLIAEREGLVSELLKLISPEKDPDLIDNCLSCLVAISSPRRSKMKLVRLGAVKVFSKLLWASNMSVSVTEKVLKLVETVSSTKEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVTNANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04071 418 PANTHER WDSAM1 PROTEIN 9 406 IPR045185 GO:0061630
Phac2g04071 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Phac2g04071 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Phac2g04071 418 SUPERFAMILY ARM repeat 119 398 IPR016024 -
Phac2g04071 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Phac2g04071 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Phac2g04071 418 Gene3D - 101 412 IPR011989 -
Phac2g04071 418 CDD RING-Ubox_PUB 11 63 IPR045210 -
Phac2g04071 418 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Phac2g04071 418 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04071 Phac-Chr2 39933210 39934909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04071 1 418 U-box Gene Family AT5G64660 52.681 3.08e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04071 - - vra:106764800 718.768