Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04038 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGATGTAGATTCCACCAAGAAGAAGAAGGAGATCACCGACAAGGTCGAGAGAAGTTACAGGAAGCGCGATGTCGACGACGATCTCCACGCCGACGAGAGGAGGAGCAAGAGGAGGGTCGACGACGACAACGGTGGTTCCAAGAAAGATCGTGACAGAGACAGGGATAGGGACAAAGACCGGGAACGTGACCGTTCATCCGGCCGTCATAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGATAGGAGAGATCGTGATAGGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAGCGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCGGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAATTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAAGTTGTCCAACTGCCTCTTGACTTGGAAACGGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACACGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCTGCAGACTTAGATGACGACGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCTGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCACCAGTTCTGCCTGCACAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCGATTTGAAACAGTGGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAAATATATGAAGCCAAGTTTAAAGGGGAGTGA 1644 0.469 MDFDEYEYLEKTVEEDVDSTKKKKEITDKVERSYRKRDVDDDLHADERRSKRRVDDDNGGSKKDRDRDRDRDKDRERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDRRDRDRDKEKERERRERDKEREERERSRRSRSRSERDRGDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPVLPAQVMPTPVVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAIFMQPQIYEAKFKGE* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04038 547 Gene3D - 450 547 IPR012677 -
Phac2g04038 547 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 383 472 IPR029123 -
Phac2g04038 547 FunFam Splicing factor CC1-like 273 379 - -
Phac2g04038 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 257 IPR000504 GO:0003723
Phac2g04038 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 477 530 IPR000504 GO:0003723
Phac2g04038 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 362 IPR000504 GO:0003723
Phac2g04038 547 SUPERFAMILY RNA-binding domain, RBD 134 263 IPR035979 GO:0003676
Phac2g04038 547 SMART rrm1_1 291 364 IPR000504 GO:0003723
Phac2g04038 547 SMART rrm1_1 189 261 IPR000504 GO:0003723
Phac2g04038 547 SMART rrm1_1 455 532 IPR000504 GO:0003723
Phac2g04038 547 SUPERFAMILY RNA-binding domain, RBD 290 537 IPR035979 GO:0003676
Phac2g04038 547 FunFam Splicing factor, CC1-like protein 449 547 - -
Phac2g04038 547 NCBIfam splicing factor, CC1-like family 71 544 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac2g04038 547 CDD RRM1_RBM39_like 189 261 - -
Phac2g04038 547 Coils Coil 120 145 - -
Phac2g04038 547 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 544 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac2g04038 547 Gene3D - 286 382 IPR012677 -
Phac2g04038 547 MobiDBLite consensus disorder prediction 14 160 - -
Phac2g04038 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Phac2g04038 547 Gene3D - 115 275 IPR012677 -
Phac2g04038 547 CDD RRM3_RBM39_like 453 535 - -
Phac2g04038 547 FunFam Splicing factor CC1-like 111 272 - -
Phac2g04038 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04038 Phac-Chr2 39696703 39703901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04038 262 363 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.66e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04038 K13091 - gmx:100793461 716.072