Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g04037 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGATGTAGATTCCACCAAGAAGAAGAAGGAGATCACCGACAAGGTCGAGAGAAGTTACAGGAAGCGCGATGTCGACGACGATCTCCACGCCGACGAGAGGAGGAGCAAGAGGAGGGTCGACGACGACAACGGTGGTTCCAAGAAAGATCGTGACAGAGACAGGGATAGGGACAAAGACCGGGAACGTGACCGTTCATCCGGCCGTCATAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGATAGGAGAGATCGTGATAGGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAGCGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCGGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAATTCAAGACGATCCAAAGGACAATGCGATAATGATGAGGGATGGTGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGCACTCAAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAAGTTGTCCAACTGCCTCTTGACTTGGAAACGGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACACGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCTGCAGACTTAGATGACGACGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCTGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCACCAGTTCTGCCTGCACAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCGATTTGAAACAGTGGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGGTAATCTTTTGA 1656 0.471 MDFDEYEYLEKTVEEDVDSTKKKKEITDKVERSYRKRDVDDDLHADERRSKRRVDDDNGGSKKDRDRDRDRDKDRERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDRRDRDRDKEKERERRERDKEREERERSRRSRSRSERDRGDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGQCDNDEGWWEYLALMFNQFMLRTQVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPVLPAQVMPTPVVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAIFMVIF* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g04037 551 MobiDBLite consensus disorder prediction 14 159 - -
Phac2g04037 551 FunFam Splicing factor CC1-like 285 392 - -
Phac2g04037 551 Gene3D - 463 549 IPR012677 -
Phac2g04037 551 SMART rrm1_1 189 274 IPR000504 GO:0003723
Phac2g04037 551 SMART rrm1_1 468 545 IPR000504 GO:0003723
Phac2g04037 551 SMART rrm1_1 304 377 IPR000504 GO:0003723
Phac2g04037 551 NCBIfam splicing factor, CC1-like family 75 549 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac2g04037 551 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 396 485 IPR029123 -
Phac2g04037 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Phac2g04037 551 Coils Coil 120 145 - -
Phac2g04037 551 SUPERFAMILY RNA-binding domain, RBD 180 280 IPR035979 GO:0003676
Phac2g04037 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 278 IPR000504 GO:0003723
Phac2g04037 551 CDD RRM3_RBM39_like 466 548 - -
Phac2g04037 551 Gene3D - 181 288 IPR012677 -
Phac2g04037 551 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 549 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac2g04037 551 SUPERFAMILY RNA-binding domain, RBD 303 545 IPR035979 GO:0003676
Phac2g04037 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 543 IPR000504 GO:0003723
Phac2g04037 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 232 IPR000504 GO:0003723
Phac2g04037 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 375 IPR000504 GO:0003723
Phac2g04037 551 CDD RRM1_RBM39_like 189 274 - -
Phac2g04037 551 Gene3D - 299 395 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g04037 Phac-Chr2 39696703 39703513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g04037 275 376 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.87e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g04037 K13091 - gmx:100793461 662.144