LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g03859	ATGGCAATAACAACTTTTAGTAGTACATCTGCTGCACAATGGGGAATTCATCCTCGGCTATTAGTAAGATCCAGTATTACAGGAAAGGTTGCATCATCCAGCCACAATGCTACCAGCAGGGTAAGCTTCATGGCCGCATCAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTACTCAATGTGGGTGCACCCCAAACTTGTAGTCGTCGCAAGGGATCAAGGTTGATTGTTAGAGCTGATGCACAGGATTATTATTCTGTCCTTGGGGTTTCAAAAAATGCTAGCAAATCTGAAATTAAGAGCGCGTACCGGAAGCTTGCCCGGAATTATCATCCGGATGTCAACAAAGAACCTGGAGCTGAACAGAAGTTTAAAGATATTAGCAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTCGAATCACTGTTTGAGGGCATGAATCGCGGTGCAGGTTCCAGAGGTTCTTGGAATGGTGCAATTGATGGTGAAGACGAGAGAGGTGGTTCCCCTGGCGACCTATTTGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGAGATGACACCAACATTTTATACTCGTGCAAGGTTTCGTATATTGATGCAATCCTGGGAACTACAACTAAGGTTCCTACTGTAGACGGAATGGTGGATTTAAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTTAATAAAAACAATATGAGGGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTAAGCAATGATGAGAGAAAGCTTATAGAGGAACTTTCTGCTTTAAGCAAAGGCAAGACTGCCACCGGTAGGAGATAG	951	0.4353	MAITTFSSTSAAQWGIHPRLLVRSSITGKVASSSHNATSRVSFMAASSSSFFSRDSTLLNVGAPQTCSRRKGSRLIVRADAQDYYSVLGVSKNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKDISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDERGGSPGDLFVVIEVIPDPVLKRDDTNILYSCKVSYIDAILGTTTKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPFLNKNNMRGDQLVRVQVEIPKRLSNDERKLIEELSALSKGKTATGRR*	317

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g03859	316	CDD	DnaJ_C	192	292	-	-
	Phac2g03859	316	ProSitePatterns	Nt-dnaJ domain signature.	124	143	IPR018253	-
	Phac2g03859	316	SUPERFAMILY	Chaperone J-domain	77	177	IPR036869	-
	Phac2g03859	316	Gene3D	DnaJ domain	80	184	IPR036869	-
	Phac2g03859	316	PRINTS	DnaJ domain signature	85	103	IPR001623	-
	Phac2g03859	316	PRINTS	DnaJ domain signature	103	118	IPR001623	-
	Phac2g03859	316	PRINTS	DnaJ domain signature	119	139	IPR001623	-
	Phac2g03859	316	PRINTS	DnaJ domain signature	139	158	IPR001623	-
	Phac2g03859	316	FunFam	Chaperone protein dnaJ A6 chloroplastic	80	183	-	-
	Phac2g03859	316	Pfam	DnaJ domain	83	144	IPR001623	-
	Phac2g03859	316	PANTHER	DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED	44	193	-	-
	Phac2g03859	316	Pfam	DnaJ C terminal domain	191	289	IPR002939	-
	Phac2g03859	316	CDD	DnaJ	83	136	IPR001623	-
	Phac2g03859	316	ProSiteProfiles	dnaJ domain profile.	83	147	IPR001623	-
	Phac2g03859	316	SMART	dnaj_3	82	139	IPR001623	-
	Phac2g03859	316	SUPERFAMILY	HSP40/DnaJ peptide-binding domain	214	300	IPR008971	GO:0006457\|GO:0051082
	Phac2g03859	316	Gene3D	-	209	315	-	-
	Phac2g03859	316	FunFam	Chaperone protein dnaJ 1, mitochondrial	209	316	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g03859	Phac-Chr2	38751670	38758025	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g03859	78	144	C2H2 Transcription Factor Family	AT1G74250	42.466	9.32e-10	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g03859	K03686		-	gmx:100811006	349.362