Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03778 ATGAAACAGTTGAAATTGGCTGCAGAATTTCACGCTATAGAGGATAATCTTCTCAGGCATAAGCCAGAAATGGATATCACATTTGAGGCTTCTGCCAGTCCGCAGCATAAAAAGATATCAGCCAGATGGGACCCGGTTGAAGCATGTCGGCCTATAATTGATGAAGCCCCTGTGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGTACAGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGGTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATGATTCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAAATGGGAGCCCTCTGTGGAGGACATTGAAGGTGAATACTGGAGAATAATAGAGCAACCAACTAATGATGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCCTTAACCAAGGATGATTCAGACAGGTATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGCGTTATGTTTTGAAGGAAGTGATATATCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTCTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAACCCATGCTCCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAATTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTACATCGCACTGTTCAGAATTCAGGTGAATTTGTTATCACCTTTCCAAGGGCGTACCACTGTGGCTTCAATTGTGGCTTCAATTGCGCAGAGGCTGTAAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGTTGAGCTTTATAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCCTTGCAGGGCTAACTCTTAATGAAAAAGAAAATCTAAAATATATAAAATGGAGTAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGAATGTCTTCCCACTCATTTAAAGAAGCTTAGAATGGACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGTTTCTCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCGCCCGATAGTTATTCCTGCCTCAAGCACTCACATTTGTTTTGCTCATGTGAGATGGACGAAAGCTTTGTACTGTTTCGTTATACCACTAATGAACTAAGTACATTGGTTGAGGCATTAGAAGGAGAAGCACATGCGATTGAAGTGTGGGCAAATAGAAACACCGGACTGGTTTCTGTTAATGCCGAGGATGCTTGCATCTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTCAAGATATTGTGCAGGAACCAATGATAAGTCAAATTCAAATATACCTAGCAGTTCTTACAGCCACATTTCTGCAGAGTTAGTCCACTCAGAATTTCATCTTGAAACTTATAGTGCACCATATGGCACTAAGGATTGTAAAAAAGATATCGTGAATGAAAAAAAATTGGCGATGGACAATGAAGATAAGGTGAAGGAAGGTTCTCTGGATTTGAATATTGATGTTATGTTTGTTGAACCTGAAAATCATTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGAGAAGTCTGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGAAACCTGGGGCTGGATGTATAGCTTCCTTGAAGAAGGAATTTTCATCATGTTCAAGGGACGTTCAAAATTCTTGTACACTAGATGGTTATAAATTGTTTGGGGTGGATCTGCAAATGCATTCTGATTCGAGAGAACAACTCAACGGCGTATTTAAAATAGGTGATGTTGAAACGTCCAATACAAGTGTATCTTTGACAAACCAAAACTTCTTAATGCAGAAGATTATTGTTTCTGTTGAGCCCGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTTTGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTAGCATGGAAGAACGTCCAAGTGAGGCCTTCACAAACACGTCAGCAGATAAGTGCTGGGAGTCAGTTCTTGAGAGACTAAATCATGAAACCAAGAAGCTAAGGAATCAAGGTGAAAGAGAACCTCCTCCCTTGGAGCTTCTACAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCATCCATCATTCAGGCTATTGAAGCTCTGGATCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGACAGTGGCATTGATGACTGTAAGCTCAGTCATGGTTCAAGTAACTCTCTAAGTGATGTCAAGACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCAGAAGACATTGTGACTCTTTTGAAGAGATGAAATTGGTGCTAGAAGGGTTATTGAAAAAGGCAAGTGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCACCAAGTGGAGAGTGGCATTTGTAACTCTGATTGAGGAAATCCAGAAAGCTTGA 3156 0.4129 MKQLKLAAEFHAIEDNLLRHKPEMDITFEASASPQHKKISARWDPVEACRPIIDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKQSKMGTGRRTAKSGSEANGASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNDSNEYGKVSDYNHWQKWEPSVEDIEGEYWRIIEQPTNDVEVYYGADLETGSLGSGFPKTSSLTKDDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGTHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQNSGEFVITFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALAGLTLNEKENLKYIKWSSACGKDGVLTKAIKTRITMEKERLECLPTHLKKLRMDSEFDLFEERECFSCFYDLHLSAVGCKCSPDSYSCLKHSHLFCSCEMDESFVLFRYTTNELSTLVEALEGEAHAIEVWANRNTGLVSVNAEDACIYKQDAESYKGWKSSRYCAGTNDKSNSNIPSSSYSHISAELVHSEFHLETYSAPYGTKDCKKDIVNEKKLAMDNEDKVKEGSLDLNIDVMFVEPENHFLHAAEYHHNKSVPYVGEVCYSEVRKKQDNMKPGAGCIASLKKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSREQLNGVFKIGDVETSNTSVSLTNQNFLMQKIIVSVEPVNLGIVMCGKLWCSKHAIYPKGFKSRVKFLSILDPPRICNYVSEVFDAGFLGPLFKVSMEERPSEAFTNTSADKCWESVLERLNHETKKLRNQGEREPPPLELLQSINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSDSGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHCDSFEEMKLVLEGLLKKASAEELSAMHKLFSSDAQFTKWRVAFVTLIEEIQKA* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03778 1051 Gene3D Cupin 41 414 - -
Phac2g03778 1051 SMART cupin_9 264 430 IPR003347 -
Phac2g03778 1051 Pfam F/Y-rich N-terminus 812 856 IPR003888 GO:0005634
Phac2g03778 1051 SMART fyrc_3 865 959 IPR003889 GO:0005634
Phac2g03778 1051 MobiDBLite consensus disorder prediction 118 166 - -
Phac2g03778 1051 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Phac2g03778 1051 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 906 - -
Phac2g03778 1051 MobiDBLite consensus disorder prediction 128 146 - -
Phac2g03778 1051 Pfam jmjN domain 57 90 IPR003349 -
Phac2g03778 1051 SMART JmjN_1 55 96 IPR003349 -
Phac2g03778 1051 Pfam C5HC2 zinc finger 520 571 IPR004198 -
Phac2g03778 1051 SUPERFAMILY Clavaminate synthase-like 173 451 - -
Phac2g03778 1051 ProSiteProfiles FYR domain FYRC motif profile. 861 951 IPR003889 GO:0005634
Phac2g03778 1051 Gene3D - 806 945 - -
Phac2g03778 1051 Pfam F/Y rich C-terminus 863 950 IPR003889 GO:0005634
Phac2g03778 1051 ProSiteProfiles FYR domain FYRN motif profile. 801 859 IPR003888 GO:0005634
Phac2g03778 1051 FunFam Putative lysine-specific demethylase JMJ16 807 945 - -
Phac2g03778 1051 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Phac2g03778 1051 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Phac2g03778 1051 SMART fyrn_3 815 859 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03778 Phac-Chr2 38240693 38249146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03778 803 987 JUMONJI Transcription Factor Family AT1G30810 53.514 1.60e-52 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac2g03778 JmjC 3.3e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03778 K11446 - gmx:100784581 1834.31