LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g03693	ATGAGTGATCAACGTTCAGAATATGGAAGGCCTGCCTCAAGTAAAAGAAGAGTGAGGGATTTATTGCTTCAACAAGATAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCATCAGCGAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTTCTCATGTATCGAAGGTTTTGTCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGGTTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTACATTCCACAAGGATGTACAAAACCTGGACCAGATGCCACTCATGAGCAGCGCACGAAATTCATCCGGTTAAAGTATGAAAGTCAAGCATTTTTGAAACCTAGTTTGCGCATTATGTCGGGAAAAATGAATCCCCCGTCAAGCATTTCCAAAGGGATTATAGATAATCTTCGAAGTTCTAGTGGTTCTCGTGAGGAAGGAGTGGCAGGATTTATTGGAAAGTTGAAGGTAAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACCAGTGATCCATATGTTATCTTCACACTTGGCCAACAGACTGTTCAGACAACTGTAGTAAATAGTAATTTGAATCCAGTCTGGAATGAAGAACTTATGCTGTCTGTTACTCAGCAATTTGGATTATTGAATTTGAAGGTATTTGATTATGACTTACTTTCAGCTGATGATATAATGGGGGAAGCAGACATTGATCTTCAACCCCTGATTACATCTGCAATGGCCTATGGAGATCCTAGTATGTTTGATAATATGCAGATAGGAAAATGGATGAAATCCCATGACAATGCGCTTATAGATGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAGGAGATATTTATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGAGTTAGCACTTGAGTGGATACCTCTTGAGTCTTGA	984	0.3882	MSDQRSEYGRPASSKRRVRDLLLQQDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSHVSKVLSVTLDEWSSDEIDAMVEVGGNSSANSIYEAYIPQGCTKPGPDATHEQRTKFIRLKYESQAFLKPSLRIMSGKMNPPSSISKGIIDNLRSSSGSREEGVAGFIGKLKVKVIKGTDLAIRDMMTSDPYVIFTLGQQTVQTTVVNSNLNPVWNEELMLSVTQQFGLLNLKVFDYDLLSADDIMGEADIDLQPLITSAMAYGDPSMFDNMQIGKWMKSHDNALIDDSTVNIVDGKVKQEIFIKLQNVESGELELALEWIPLES*	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g03693	327	CDD	C2_ArfGAP	170	314	-	-
	Phac2g03693	327	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	169	327	-	-
	Phac2g03693	327	Pfam	C2 domain	171	262	IPR000008	-
	Phac2g03693	327	PRINTS	HIV Rev interacting protein signature	46	63	IPR001164	GO:0005096
	Phac2g03693	327	PRINTS	HIV Rev interacting protein signature	67	88	IPR001164	GO:0005096
	Phac2g03693	327	PRINTS	HIV Rev interacting protein signature	27	46	IPR001164	GO:0005096
	Phac2g03693	327	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	10	326	IPR044518	GO:0005096\|GO:0005543
	Phac2g03693	327	SMART	C2_3c	172	267	IPR000008	-
	Phac2g03693	327	FunFam	stromal membrane-associated protein 1 isoform X1	2	135	-	-
	Phac2g03693	327	Gene3D	C2 domain	170	327	IPR035892	-
	Phac2g03693	327	CDD	ArfGap	18	124	-	-
	Phac2g03693	327	Gene3D	Arf GTPase activating protein	1	135	IPR038508	-
	Phac2g03693	327	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	171	315	IPR035892	-
	Phac2g03693	327	ProSiteProfiles	C2 domain profile.	151	269	IPR000008	-
	Phac2g03693	327	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	15	129	IPR001164	GO:0005096
	Phac2g03693	327	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	132	IPR037278	-
	Phac2g03693	327	SMART	arf_gap_3	17	137	IPR001164	GO:0005096
	Phac2g03693	327	Pfam	Putative GTPase activating protein for Arf	16	131	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g03693	Phac-Chr2	37698461	37705592	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g03693	1	326	C2H2 Transcription Factor Family	AT4G21160	69.345	3.57e-179	497

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g03693	K12486		-	gmx:100777084	542.732