Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03651 ATGGCTTTTCCAAACCAATCCATGTCATCAGTTTCTCCCGAGAGAAAGACGGGAAGGGGAAAGATTGAGATCAAGAGGATCGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTTCTTTGTGATGCAGAGGTTGCTCTAATAGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCTTCGATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAGTGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTCTACCAGCAAGAAGCTGCGAAACTGCGAGTTCAAATTAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCAATATGAATGCCAAGGATCTCAAAAATCTAGAGACTAAATTAGAAAAAGGAATCAGCAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAGAAGAGGGTAAATGTTTTCCTTGTACTCATCTTCAAAATTTTAAGGAGACAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATGGCAGAAAGGGAAAGGAGTGAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCCAATAATAACCAATATGCTGGACAAGACCACATGTCCCTCCAATTTGTTTGAAGAGTTTAAGGTTGCGAAGGATAAATACTAA 798 0.4123 MAFPNQSMSSVSPERKTGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSNMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRVNVFLVLIFKILRRQTCTITTSFLEQRWQKGKGVSIMLTCCLEAQATNQCNLSLILVASSKSLDYNPIITNMLDKTTCPSNLFEEFKVAKDKY* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03651 265 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Phac2g03651 265 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Phac2g03651 265 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Phac2g03651 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 182 - -
Phac2g03651 265 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Phac2g03651 265 Coils Coil 140 160 - -
Phac2g03651 265 Coils Coil 103 130 - -
Phac2g03651 265 MobiDBLite consensus disorder prediction 1 21 - -
Phac2g03651 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Phac2g03651 265 Pfam K-box region 100 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g03651 265 ProSiteProfiles K-box domain profile. 103 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g03651 265 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Phac2g03651 265 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Phac2g03651 265 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Phac2g03651 265 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Phac2g03651 265 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Phac2g03651 265 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03651 Phac-Chr2 37415043 37420852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03651 15 172 MADS-box Gene Family AT3G58780 75.949 3.25e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac2g03651 K-box 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03651 K09264 - gmx:100776263 303.908