LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g03641	ATGGATGAGGCACTGGGTAGTTCATGTTCCCTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCTGTCCACGAATTCAATTGTTTCGTGGAGTGTCTCTAGCAAAAGTTTCATTGTGTGGAATCCTCCAGAATTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTCAACACATATGGATTTAAGAAAATTGACCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATTCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGCCCATTAGGGGACTCGGAAAGGCAGGGTTTTACTGATGGAATAGAGAAGCTTAAACGTGATAAAGAGCGACTTCTAGTCGAGTTGCAGAAATTTCAGCATGAGTGGCAGACATATGAGATACAAATTCATTGCTCGAACGATAGGTTGGAAAAGTTGGAACAAAAACAACACAAGATGGTTTCTTCGATTTCTCATGTATTGCAGAAACCTGTGCTTGCTGTAAATATCTTGCCTCTGACAGAAACTATGGATAGAAAACGAAGGTTACCGAGAAGTGGCCACTACTACGATGAATCTAGTATTGAAGATGCTATTGAAACTTCTCAAATGTTACCTAGAGAAAATGCAGAGAATACCACTGTCTTGACATTGAATGTGGAGCGATTGGATCAGCTTGAATCATCCGTGGCATTTTGGGAGGCTATTGCACATGATATTGGCGATAACTTCGCTCAAATTCAGTCCAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCATCCATATCTTGTGCGCAATTAGATGTTGATGTTCGGCCTAAATCATCTGGAATAGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCCTGATCCACTTGCATCAAAAGATCAACCTGCAGGAATCACTGTCGCAGCGACTGGAGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTGTGATGGCAGAAAAAATGAAGGAAAACCTAATGATCATAGCAAATTTTGGTGGAATATCCGGAATGCAAATAATCTTTCAGAACCGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG	1209	0.4194	MDEALGSSCSLPPFLAKTYEMVDDLSTNSIVSWSVSSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLGDSERQGFTDGIEKLKRDKERLLVELQKFQHEWQTYEIQIHCSNDRLEKLEQKQHKMVSSISHVLQKPVLAVNILPLTETMDRKRRLPRSGHYYDESSIEDAIETSQMLPRENAENTTVLTLNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDFDESTSCADSPSISCAQLDVDVRPKSSGIDMNSEPTAAAVPDPLASKDQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDCDGRKNEGKPNDHSKFWWNIRNANNLSEPMGHVGQAEKT*	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g03641	402	Gene3D	-	7	104	IPR036388	-
	Phac2g03641	402	MobiDBLite	consensus disorder prediction	347	379	-	-
	Phac2g03641	402	SUPERFAMILY	"Winged helix" DNA-binding domain	10	103	IPR036390	-
	Phac2g03641	402	MobiDBLite	consensus disorder prediction	354	377	-	-
	Phac2g03641	402	FunFam	Heat shock transcription factor 1	7	104	-	-
	Phac2g03641	402	Coils	Coil	132	152	-	-
	Phac2g03641	402	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac2g03641	402	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac2g03641	402	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac2g03641	402	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac2g03641	402	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac2g03641	402	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	232	IPR027725	-
	Phac2g03641	402	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g03641	Phac-Chr2	37312326	37315520	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g03641	7	402	HSF	AT4G18880	52.826	2.99e-124	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Phac2g03641		HSF_DNA-bind	2.9e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g03641	K09419		-	gmx:100798004	719.539