Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03639 ATGGCTTCAGCGGCTATATTTTCGTCGCTTCGGCGGCGCCGGTCGCCATCGCTGGAGGCGTTTATTGTGCCGGTTGACCTCTCTGAGGTGGCGCTGCTGGAGACACTTATCTACGTCGCCGGAGACGTCGTATCATGCTTCTCCGACAATCGGTTTCCCTTCCAGCGCCGGAACTCGCGTGCCCTCGTCGGAAAAGTGGAAATTTTCCGGTCAATGTTGGAGTGCTTGAGAGACTCCGCCGACGGTGGCGTTCTTCTCCCCACGGCGGTGCTGTGCCTAAAGGAGCTTTATTTGCTACTATATCGCTCCAAGATTCTCCTTGATTACTGTGCCCGATCGAGCAAGTTGTGGCTCTTGCTTCAGAACCATTGTGTTTCTGGTCACTTCCATGATTTGAGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGAGAGATTGGACTCAATGATGACGTTAGGGAACAGGTTGAGTTGTTGCAGAGACAGTCCAAAAGGGCTAAGTTGTTCATAGATAAGAAAGATGATGCCCTTAGGACAAGGTTCTTTTGGTTTCTGGATGAATTTGAAAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAGTTGCAGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTCGAAGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACAGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGTAGGTTTTTGTTATTTGGGTTTGAGGACGAATTGGAAATTGAGATTCAGAAGAGGGCGAGGAAGAGGTTGATTACTCAGGAAATTGCTGAAACATTTTTTACTGTTCCTAAGGACTTTTGCTGTCCGATAACACTGGATTTGATGTGTGATCCTGTAATAATTTCTACCGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGCACTTGTCCCAAAACTGGGCTATTGCTTTCACATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAGTGGTGCAGCGCACATGGCGTGCCCTATGATCCACCTGAGGGGGTTGATCCATCTGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGAAGCTAACCGAGAGACGGCCATGCTTCTCATTCAGCAGCTTGCTGATGGGTCTCAAGTTGCAAAGACTGTGGCTGCCAGGGAGATAAGATTGCTGGCCAAAAATGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCAATTCCTCATCTTAGGAACTTGCTTTCCTCTCCCAATGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATTTATCAATTTTTGAAAGAAATAAGAGTATGATCATGGAGGAAGGGTGTTTGGGATCAATTGTTGAGGTGTTGCAATTCGGGCACACGACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGAGTATAAGAAACGAATTGCGGATAATGTGGGAGCTGTTGAAGCATTGGCATGGCTGTTGCTAGAGGGAACTCAAAGAGGGAAGAAGGACGCTGTCACAGCATTATTTAATCTCTCCACCCATACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCGTCGCTTTGGGGAATGAAGGAGTTTCTGAGGAAGCAGCTGGTGCCTTGGCCTTAATTGTTCGGCAGCCTATTGGCGCCATGGCAGTGGTGGGGGAGGAAGCAGCAGTAGGTGGATTGCTAGGAATTATGCGTTGTGGAACGCCAAGAGGTAAAGAGAATGCAGTTGCAGTCTTGCTGGAGCTGTGCAGGAGTGGTGGTGCAGCTGCAACTGAAAGGGTGGTTAGGGCGCCTGCCTTGGCCGGCTTGCTTCAAACCTTGCTTTTTACAGGGACAAAGAGGGCAAGAAGAAAAGCTGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTACAAGCTTTGTGAGTGATGTTTCACTTCCAATGTCCATTTCTGTTCCTGTTTTATAA 2145 0.4783 MASAAIFSSLRRRRSPSLEAFIVPVDLSEVALLETLIYVAGDVVSCFSDNRFPFQRRNSRALVGKVEIFRSMLECLRDSADGGVLLPTAVLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEIGLNDDVREQVELLQRQSKRAKLFIDKKDDALRTRFFWFLDEFESGRVPDSKDLRCFFVDKLQMLDAKSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEDELEIEIQKRARKRLITQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGLLLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLEANRETAMLLIQQLADGSQVAKTVAAREIRLLAKNGKENRAFIAQAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFERNKSMIMEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKRIADNVGAVEALAWLLLEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEGVSEEAAGALALIVRQPIGAMAVVGEEAAVGGLLGIMRCGTPRGKENAVAVLLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFVSDVSLPMSISVPVL* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03639 714 FunFam RING-type E3 ubiquitin transferase 363 683 - -
Phac2g03639 714 Coils Coil 214 234 - -
Phac2g03639 714 CDD RING-Ubox_PUB 288 340 IPR045210 -
Phac2g03639 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Phac2g03639 714 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Phac2g03639 714 Gene3D - 393 509 IPR011989 -
Phac2g03639 714 Gene3D - 510 671 IPR011989 -
Phac2g03639 714 SMART arm_5 545 583 IPR000225 GO:0005515
Phac2g03639 714 SMART arm_5 504 544 IPR000225 GO:0005515
Phac2g03639 714 SMART arm_5 420 460 IPR000225 GO:0005515
Phac2g03639 714 SMART arm_5 461 502 IPR000225 GO:0005515
Phac2g03639 714 SUPERFAMILY ARM repeat 393 667 IPR016024 -
Phac2g03639 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Phac2g03639 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Phac2g03639 714 PANTHER U BOX DOMAIN-CONTAINING 58 670 - -
Phac2g03639 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Phac2g03639 714 SUPERFAMILY RING/U-box 276 361 - -
Phac2g03639 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Phac2g03639 714 FunFam RING-type E3 ubiquitin transferase 270 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03639 Phac-Chr2 37289006 37292605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03639 1 714 U-box Gene Family AT1G29340 67.211 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03639 - - gmx:100797462 1273.07