Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03531 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGACAATTCGGGTCCCGGTTTTTCTTCTAACAATGTGGGAACTGGTAGCACTTTAGCTCCTTCACGACCAGTTTATGTTCCTCCTCATCTCAGGAACCGTCAGCCATCAGCTGAAGCCCCAGCCCCAGCATACAATGGTCCTTCTTCTGGTTCTGTTGGCTCTAGTGCTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAACGATAATCGTTCTGGGTATGGTGGTGGTGGTGGACGCCCAGGTGGATGGGGAAATAAAAGTGGTGGATGGGATCGTGGCAGGGAAGCCAATCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCAGTGGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATCGACTTGGGTGATGCACTTAATGAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGTACTGTGTATCCACTTGCGCTTGTTCTCTCTCCAACGAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGTGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGAGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTGGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGATATGCCTCCACCAGGTGCTAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATACAGAGACTGGCTTCTGATTTTCTTTCAAAATATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTTGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCCGCAACTACTATTCATGGTGACAGGTCGCAGCAGGAAAGAGAATTAGCATTGAGGTCCTTTAAAAGTGGCAATACCCCCATATTGGTTGCTACAGATGTTGCTGCACGTGGTCTTGATATCCCCCATGTTGCTCATGTAGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACTGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGGTCTTTTGGTGGAGGGAGAAACCGCCGATCAGGTGGTCGGTTTGGTAGTCGTGACTTTAGGAGAGAGGGCTCGTTTACCAGAGGTTCTTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGTGGATATGGAGGTGGCTCTGGTGGGTATGCTGGAGGAGGGTATGGTCCTGGCGTCACTAGTGCCTGGGACTGA 1848 0.4708 MRTSWADLAANSAADNSGPGFSSNNVGTGSTLAPSRPVYVPPHLRNRQPSAEAPAPAYNGPSSGSVGSSAAGNSGSRWPAPRNDNRSGYGGGGGRPGGWGNKSGGWDRGREANPFEEEDNAEEAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSFGGGRNRRSGGRFGSRDFRREGSFTRGSSDYYSAGNSSGGGYGGGSGGYAGGGYGPGVTSAWD* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03531 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 549 IPR001650 -
Phac2g03531 615 SMART helicmild6 429 510 IPR001650 -
Phac2g03531 615 MobiDBLite consensus disorder prediction 1 32 - -
Phac2g03531 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 527 IPR027417 -
Phac2g03531 615 CDD SF2_C_DEAD 383 519 - -
Phac2g03531 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Phac2g03531 615 FunFam Probable ATP-dependent RNA helicase DDX4 117 373 - -
Phac2g03531 615 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
Phac2g03531 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 125 549 - -
Phac2g03531 615 FunFam ATP-dependent RNA helicase RhlB 374 552 - -
Phac2g03531 615 MobiDBLite consensus disorder prediction 61 81 - -
Phac2g03531 615 SMART ultradead3 174 386 IPR014001 -
Phac2g03531 615 CDD DEADc_DDX3_DDX4 156 377 IPR044763 GO:0003724|GO:0005524
Phac2g03531 615 Gene3D - 110 373 IPR027417 -
Phac2g03531 615 Pfam DEAD/DEAH box helicase 179 360 IPR011545 GO:0003676|GO:0005524
Phac2g03531 615 Gene3D - 374 552 IPR027417 -
Phac2g03531 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 371 IPR014001 -
Phac2g03531 615 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03531 Phac-Chr2 36474978 36485666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03531 153 542 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 1.37e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03531 K11594 - gmx:100795756 1030.01