Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03479 ATGGACGCAAGCAGGTCTGAGGGAAAGAGGGTCTTGAGGTACAACGAGGAGGAGGAGGAGGATGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGTTGAGACGGGTTTTGAAGAAGAAGGAAGGAGGAATAAGAGAGTAATGACAGATCTCTATGGAAAGAAAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTAGATAATTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGGCACAAGGTTTGCGAGTACCATGCCAAGGTTCATTCCGTACTCATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTAATCTTTGCTGTGACCTGCCTGAGGGAAAAAGATTCCATGAGCTGTCTGAATTTGATGAATCAAAAAGGAGTTGTAGAACACGATTGGTTGGCCATAATGAGAGGCGTCGCAAAAATGCAGTTGACTGTCGTGGAGAATAATTTCTTCTATGTAACGATGAACATTAATAAACCTTGA 516 0.4419 MDASRSEGKRVLRYNEEEEEDEEEEEEEEEEVETGFEEEGRRNKRVMTDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKVHSVLMAGLQQRFCQQCSRLIFAVTCLREKDSMSCLNLMNQKGVVEHDWLAIMRGVAKMQLTVVENNFFYVTMNINKP* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03479 171 Coils Coil 9 35 - -
Phac2g03479 171 MobiDBLite consensus disorder prediction 1 16 - -
Phac2g03479 171 MobiDBLite consensus disorder prediction 1 45 - -
Phac2g03479 171 Pfam SBP domain 66 113 IPR004333 GO:0003677
Phac2g03479 171 SUPERFAMILY SBT domain 64 116 IPR036893 GO:0003677|GO:0005634
Phac2g03479 171 ProSiteProfiles Zinc finger SBP-type profile. 63 142 IPR004333 GO:0003677
Phac2g03479 171 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 112 IPR044817 GO:0003677
Phac2g03479 171 MobiDBLite consensus disorder prediction 17 35 - -
Phac2g03479 171 Gene3D - 62 117 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03479 Phac-Chr2 36025715 36027747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03479 52 113 SBP-box Gene Family AT1G53160 62.903 1.11e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac2g03479 SBP 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03479 - - pvu:PHAVU_002G230300g 306.605