Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03382 ATGGCGGATGAGGAGGTGGACTTTTCGAAACTGTTCCCCGGTGACGATGGCGATGACAACATGTTTTATATAGATATACATACCGTTCAGAAGGTTCTTGATGAAGACGATGATTGTGATTTTCTGGAGAAATTTCCCGAGGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACACATTTCAGATACAAAATGGGTCTCAAGTGTTACAAGAACCACAATTTTCTAGGTTGGGCTTTGCAGATTCAGTCACCAGTTTTTCTCCGTTCTGCTCTGATGCGTCAGATTCTGGTGTCAAAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATTGTGAACCTGAAAACCAGGGACCTCGATCTCAGGCTTGCTCCTCCCCAAATGCATTTCCTGGTAATCTCAGTAACTCACTCTCCCATGGTGAAAGTGATGAGGTTTTCTGCACAGAAAGGACCAGAGTCTCTAAACATGAGGTACCTGCTTGTAGTGTGGAATCAAGTTTACCTGAGGCACAGTCAAAAAATATATCAATTTGTGGAGATAATTTGAATCCAAGTCTGTGGAATGGTGAAAATGAGATCCAATTCAAGCATTTGCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATCGTTGACAATGATGATGTAAATATTGAAGGATACGTTGAAGACACCATTGGAGGAGTTTCTGGACAACAGGAAAATGATTCGTGTACATCTTTTGAAGCGTTTATGGATGCTGATATATCTTTGCATGTTGCAACTTCAGCTGATTCTACTATTTTTCAAGGTTCCCATGCTTCAAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACAAGGGAATGCATAATGGACCCTTTATTGCTGACTCTTCTCTTCGTATTTTGCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGTCAAAAATGTGGATTTAAATGCTGATATTACATGTATGAGTAGTGGCATGCCCTCGAACACTACTGGGTGGATGTCTTTTCAAGATTTAAGTGATAATGTTTATCCATCTTTTCATTCTAGTAAAGGTAATTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGATTCATACATGCCATATGGAGACCATTGCCAAAACAATTTTCATTGTGAGGATGCTAAGTTCGATGTAGGCCAACCTGTGAAACAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATTTTTTGAGATTGAAGATAATTATGCAGTTATACCTGGGATATCCAATCAAAATCAAGATAGCAATGGTGGAATTGCTAGTTTTCAAGGAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCATGCACTAATCACCAGTGAGAAGCAGTTTGGTTCTGTTAAGAGAGAAGGAGGAGTTCAACATAAACTTGTTGATTCTCATCTTTCAAAAGGAAAAATTAAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCACTGGGAATTTCTCTAATATTTCTCAATCTTCTGGATATGCCAATCCTCAGTCTTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAACTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTCTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGGAAAACAGTATCAACTATTGCATTGATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCTCAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAATGGTCGAGTAAAGGAAGAATCTAATATTTGTGAGGATAAGTCAAGTAGATATCCATTCAAGAGCATGAATTTGCTAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCTAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGACGAGGAAAAAGGAAATGTTGAAGATCAGGCTGTATCAAGTAGGAAAAGAAAATGTCCCTCTAATTCTAGTAAAAGTGGCAAGAAGAGATCAGATGGAACAGTTCCTGAGGCTAATGCTCGACCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAAAGTATAAAAAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCGAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTTTAAGATATGATCCCTATGATGTCTACATATCATTTTGTTCTAAAATTAAGAACCCAATTAGCAGAAATCCAACAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAGGGTACACTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAATATATTGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAACAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTCAGACAAGCTTGTGATCACCCTTTGCTTGTGAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTTTGTAGTATTTGTAATGATCCTCCTGAAGATGCGTTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACCGGTGATGACAACCAGTGCCCTGCTGCAAATTGTAAAATTCCACTGAGCACATCTAGGGTATTTTCAAAAGCCACTCTAAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCTCTGGTTCCGAAGCGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCACTGTGTAAGCCACAGTCCTATACATCAAAAAGCACTTCTGAGCATAGCACTTCCAGGGAAGATAATGATTGCCCTGGGAACCCCTCCAATGCTGACAATGGGAAATCCTTCATAGATTCTCTTGAGCATCAAAATTTGTCTGATGATAATAGATGCCATGGTGATTCAGTTACTGTCGTAGGGGATAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCTATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTCCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGTCTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAATGATGGTTGCATCTGCTTTTGGGGAGGATGAAACTGGTGATCGTCAGAGTCGCCTCACCGTGGATGATTTGAAATACTTATTCATGATGTGA 4050 0.4035 MADEEVDFSKLFPGDDGDDNMFYIDIHTVQKVLDEDDDCDFLEKFPEDSSSKNVSPSESGTHDTFQIQNGSQVLQEPQFSRLGFADSVTSFSPFCSDASDSGVKGSVGVSDSVANSWLDCEPENQGPRSQACSSPNAFPGNLSNSLSHGESDEVFCTERTRVSKHEVPACSVESSLPEAQSKNISICGDNLNPSLWNGENEIQFKHLREDVEFENTSISSIVDNDDVNIEGYVEDTIGGVSGQQENDSCTSFEAFMDADISLHVATSADSTIFQGSHASSDFIDYHGSSTYYKGMHNGPFIADSSLRILPNGFCSQLPNDEMMNNMKVKNVDLNADITCMSSGMPSNTTGWMSFQDLSDNVYPSFHSSKGNFDDMSSLSLSACDSYMPYGDHCQNNFHCEDAKFDVGQPVKQTPGIFSSVGCQAYQFFEIEDNYAVIPGISNQNQDSNGGIASFQGNVDNLNLQAANISWPHAHALITSEKQFGSVKREGGVQHKLVDSHLSKGKIKNFHVEEDPDVCIIEDISHPAPTSRSTITGNFSNISQSSGYANPQSYMVGSTRLKACDERNILRVALQDLSQPKSELSLPEGLLAVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNALKSELDSLNLDVDDDVLPQNGRVKEESNICEDKSSRYPFKSMNLLNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDQAVSSRKRKCPSNSSKSGKKRSDGTVPEANARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYISFCSKIKNPISRNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIPLSTSRVFSKATLNSCLSDQGCDNSPGCSGSEAEEFEPWSQSQPYESSKIKAALEVLKSLCKPQSYTSKSTSEHSTSREDNDCPGNPSNADNGKSFIDSLEHQNLSDDNRCHGDSVTVVGDKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVASHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKDTVEDRILALQQKKRMMVASAFGEDETGDRQSRLTVDDLKYLFMM* 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03382 1349 MobiDBLite consensus disorder prediction 769 790 - -
Phac2g03382 1349 SUPERFAMILY RING/U-box 1029 1081 - -
Phac2g03382 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 924 1348 IPR027417 -
Phac2g03382 1349 CDD DEXDc_SHPRH-like 594 916 - -
Phac2g03382 1349 ProSiteProfiles Zinc finger RING-type profile. 1032 1071 IPR001841 -
Phac2g03382 1349 MobiDBLite consensus disorder prediction 767 811 - -
Phac2g03382 1349 SMART ring_2 1032 1070 IPR001841 -
Phac2g03382 1349 ProSitePatterns Zinc finger RING-type signature. 1047 1056 IPR017907 -
Phac2g03382 1349 Gene3D - 806 917 IPR038718 -
Phac2g03382 1349 Gene3D - 689 793 IPR038718 -
Phac2g03382 1349 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1185 1344 IPR001650 -
Phac2g03382 1349 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 498 1348 - -
Phac2g03382 1349 SMART ultradead3 590 893 IPR014001 -
Phac2g03382 1349 MobiDBLite consensus disorder prediction 1140 1170 - -
Phac2g03382 1349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 878 IPR014001 -
Phac2g03382 1349 Pfam SNF2-related domain 614 993 IPR000330 GO:0005524|GO:0140658
Phac2g03382 1349 Gene3D - 931 1349 IPR027417 -
Phac2g03382 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 916 IPR027417 -
Phac2g03382 1349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1017 1083 IPR013083 -
Phac2g03382 1349 Pfam Zinc finger, C3HC4 type (RING finger) 1032 1068 IPR018957 GO:0046872
Phac2g03382 1349 MobiDBLite consensus disorder prediction 1155 1170 - -
Phac2g03382 1349 MobiDBLite consensus disorder prediction 43 64 - -
Phac2g03382 1349 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 799 928 - -
Phac2g03382 1349 SMART helicmild6 1208 1291 IPR001650 -
Phac2g03382 1349 CDD SF2_C_SNF 1194 1301 - -
Phac2g03382 1349 Pfam Helicase conserved C-terminal domain 1192 1291 IPR001650 -
Phac2g03382 1349 Gene3D - 564 652 IPR038718 -
Phac2g03382 1349 MobiDBLite consensus disorder prediction 48 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03382 Phac-Chr2 35311102 35319745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03382 517 1348 RAD5 or RAD16-like Gene Family AT1G61140 60.731 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac2g03382 SNF2_N 7.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03382 - - gmx:100802436 2178.29