Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03380 ATGGATGCTGATATATCTTTGCATGTTGCAACTTCAGCTGATTCTACTATTTTTCAAGGTTCCCATGCTTCAAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACAAGGGAATGCATAATGGACCCTTTATTGCTGACTCTTCTCTTCGTATTTTGCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGTCAAAAATGTGGATTTAAATGCTGATATTACATGTATGAGTAGTGGCATGCCCTCGAACACTACTGGGTGGATGTCTTTTCAAGATTTAAGTGATAATGTTTATCCATCTTTTCATTCTAGTAAAGGTAATTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGATTCATACATGCCATATGGAGACCATTGCCAAAACAATTTTCATTGTGAGGATGCTAAGTTCGATGTAGGCCAACCTGTGAAACAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATTTTTTGAGATTGAAGATAATTATGCAGTTATACCTGGGATATCCAATCAAAATCAAGATAGCAATGGTGGAATTGCTAGTTTTCAAGGAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCATGCACTAATCACCAGTGAGAAGCAGTTTGGTTCTGTTAAGAGAGAAGGAGGAGTTCAACATAAACTTGTTGATTCTCATCTTTCAAAAGGAAAAATTAAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCACTGGGAATTTCTCTAATATTTCTCAATCTTCTGGATATGCCAATCCTCAGTCTTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAACTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTCTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGGAAAACAGTATCAACTATTGCATTGATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCTCAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAATGGTCGAGTAAAGGAAGAATCTAATATTTGTGAGGATAAGTCAAGTAGATATCCATTCAAGAGCATGAATTTGCTAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCTAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGACGAGGAAAAAGGAAATGTTGAAGATCAGGCTGTATCAAGTAGGAAAAGAAAATGTCCCTCTAATTCTAGTAAAAGTGGCAAGAAGAGATCAGATGGAACAGTTCCTGAGGCTAATGCTCGACCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAAAGTATAAAAAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCGAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTTTAAGATATGATCCCTATGATGTCTACATATCATTTTGTTCTAAAATTAAGAACCCAATTAGCAGAAATCCAACAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAGGGTACACTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAATATATTGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAACAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTCAGACAAGCTTGTGATCACCCTTTGCTTGTGAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTTTGTAGTATTTGTAATGATCCTCCTGAAGATGCGTTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACCGGTGATGACAACCAGTGCCCTGCTGCAAATTGTAAAATTCCACTGAGCACATCTAGGGTATTTTCAAAAGCCACTCTAAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCTCTGGTTCCGAAGCGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCACTGTGTAAGCCACAGTCCTATACATCAAAAAGCACTTCTGAGCATAGCACTTCCAGGGAAGATAATGATTGCCCTGGGAACCCCTCCAATGCTGACAATGGGAAATCCTTCATAGATTCTCTTGAGCATCAAAATTTGTCTGATGATAATAGATGCCATGGTGATTCAGTTACTGTCGTAGGGGATAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCTATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTCCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGTCTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAATGATGGTTGCATCTGCTTTTGGGGAGGATGAAACTGGTGATCGTCAGAGTCGCCTCACCGTGGATGATTTGAAATACTTATTCATGATGTGA 3285 0.4024 MDADISLHVATSADSTIFQGSHASSDFIDYHGSSTYYKGMHNGPFIADSSLRILPNGFCSQLPNDEMMNNMKVKNVDLNADITCMSSGMPSNTTGWMSFQDLSDNVYPSFHSSKGNFDDMSSLSLSACDSYMPYGDHCQNNFHCEDAKFDVGQPVKQTPGIFSSVGCQAYQFFEIEDNYAVIPGISNQNQDSNGGIASFQGNVDNLNLQAANISWPHAHALITSEKQFGSVKREGGVQHKLVDSHLSKGKIKNFHVEEDPDVCIIEDISHPAPTSRSTITGNFSNISQSSGYANPQSYMVGSTRLKACDERNILRVALQDLSQPKSELSLPEGLLAVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNALKSELDSLNLDVDDDVLPQNGRVKEESNICEDKSSRYPFKSMNLLNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDQAVSSRKRKCPSNSSKSGKKRSDGTVPEANARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYISFCSKIKNPISRNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIPLSTSRVFSKATLNSCLSDQGCDNSPGCSGSEAEEFEPWSQSQPYESSKIKAALEVLKSLCKPQSYTSKSTSEHSTSREDNDCPGNPSNADNGKSFIDSLEHQNLSDDNRCHGDSVTVVGDKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVASHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKDTVEDRILALQQKKRMMVASAFGEDETGDRQSRLTVDDLKYLFMM* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03380 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 669 1093 IPR027417 -
Phac2g03380 1094 CDD SF2_C_SNF 939 1046 - -
Phac2g03380 1094 MobiDBLite consensus disorder prediction 900 915 - -
Phac2g03380 1094 MobiDBLite consensus disorder prediction 512 556 - -
Phac2g03380 1094 Gene3D - 309 397 IPR038718 -
Phac2g03380 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 762 828 IPR013083 -
Phac2g03380 1094 Pfam SNF2-related domain 359 738 IPR000330 GO:0005524|GO:0140658
Phac2g03380 1094 CDD DEXDc_SHPRH-like 339 661 - -
Phac2g03380 1094 Gene3D - 676 1094 IPR027417 -
Phac2g03380 1094 SMART ultradead3 335 638 IPR014001 -
Phac2g03380 1094 Pfam Helicase conserved C-terminal domain 937 1036 IPR001650 -
Phac2g03380 1094 MobiDBLite consensus disorder prediction 514 535 - -
Phac2g03380 1094 Pfam Zinc finger, C3HC4 type (RING finger) 777 813 IPR018957 GO:0046872
Phac2g03380 1094 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 354 623 IPR014001 -
Phac2g03380 1094 ProSitePatterns Zinc finger RING-type signature. 792 801 IPR017907 -
Phac2g03380 1094 SUPERFAMILY RING/U-box 774 826 - -
Phac2g03380 1094 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 544 673 - -
Phac2g03380 1094 ProSiteProfiles Zinc finger RING-type profile. 777 816 IPR001841 -
Phac2g03380 1094 SMART ring_2 777 815 IPR001841 -
Phac2g03380 1094 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 266 1093 - -
Phac2g03380 1094 Gene3D - 551 662 IPR038718 -
Phac2g03380 1094 Gene3D - 434 538 IPR038718 -
Phac2g03380 1094 MobiDBLite consensus disorder prediction 885 915 - -
Phac2g03380 1094 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 930 1089 IPR001650 -
Phac2g03380 1094 SMART helicmild6 953 1036 IPR001650 -
Phac2g03380 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 661 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03380 Phac-Chr2 35311102 35319745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03380 262 1093 RAD5 or RAD16-like Gene Family AT1G61140 60.967 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac2g03380 SNF2_N 4.4e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03380 - - gmx:100802436 1835.08