Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03260 ATGGGGAGAGGAAAGATCGTGATTCAAAGGATTGACAATTCGACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAGTGGATTGGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTCTTCTCCAGCACTGACAAGCTTTATGACTATGCTAGCTCAAGCTTGAAATCTGTTATTGATCGCTATAACAAGGTCAAAGAGGACCCTCATCAGTTAATGAACCCTGCTTTAGAAATCAAGGGAGAAGTAGCAAGTTTAAGGCAACAAGTGCAGTACATGCAAAAATGTAACAGGCAAATGATGGGCGAAGAACTTTCTGGTTTGGGTATTAAGGAGTTGGGGAATCTGGAAAATCGACTGGAGAGGAGTTTGAAGGGTGTTCGCGTGAAAAAGGATCAAATCCTGATTGATGAGGTCAAAGAACTACACCAAAAGGGAACCCTAGCCTATCAAGAAAACGTAGAACTTCATAGAAAGATAAATCTCATACGCGAGGACAATGAAAAACTACAAAAGATTATTGAAGCAAAAGGTAGAAAGGAAGGTGCTGCAACATCCAATCCTCTTTCTACTATCACTTATGGTTATGACATATTTGCTCCTATAAGTCTCAAGCTAAGCCAGCCATAG 651 0.4086 MGRGKIVIQRIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTDKLYDYASSSLKSVIDRYNKVKEDPHQLMNPALEIKGEVASLRQQVQYMQKCNRQMMGEELSGLGIKELGNLENRLERSLKGVRVKKDQILIDEVKELHQKGTLAYQENVELHRKINLIREDNEKLQKIIEAKGRKEGAATSNPLSTITYGYDIFAPISLKLSQP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03260 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Phac2g03260 216 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Phac2g03260 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac2g03260 216 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Phac2g03260 216 Pfam K-box region 85 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g03260 216 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phac2g03260 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac2g03260 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac2g03260 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac2g03260 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac2g03260 216 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Phac2g03260 216 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g03260 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac2g03260 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03260 Phac-Chr2 34146407 34158098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03260 1 215 MADS-box Gene Family AT2G14210 58.636 2.52e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac2g03260 K-box 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03260 K09264 - gmx:100779647 334.339