Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03225 ATGACTAGAAAAAGGATACAGATCAAGAAAATCGACAACATCAGTTCCAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTATCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCTCGATCGCCATTCAGCAATGCATAGATCGGATCGTACCTATATGGAGCTGCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAGTCATGAACTGAGGCAGTTGAATGGGGAAGATCTGCAAGGATTGACACTACAAGAACTGCAGAAAATAGAGGAACATCTTAAAAGAGGTTTGAGCAATGTTTCAAAACTAAAGGATGAAAAAGTTATGCAAGAGATCAGCGCCCTTAAAAGAAAGGGAGTGGAACTAATGGAGGAAAACCAAAGATTGAAAAAGGTACCGAGCCTTATCCCCTTACATAGGCAATCATCGGAATCCATTAGCAATTCATCTAATCTTCCTGAAGATGGTGGAAGTGACACATCTCTCAAGTTGGGGTTACCTTAA 612 0.4118 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERLDRHSAMHRSDRTYMELQIESDSNDILRKKVEDKSHELRQLNGEDLQGLTLQELQKIEEHLKRGLSNVSKLKDEKVMQEISALKRKGVELMEENQRLKKVPSLIPLHRQSSESISNSSNLPEDGGSDTSLKLGLP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03225 203 MobiDBLite consensus disorder prediction 162 203 - -
Phac2g03225 203 MobiDBLite consensus disorder prediction 174 193 - -
Phac2g03225 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Phac2g03225 203 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g03225 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Phac2g03225 203 Coils Coil 92 112 - -
Phac2g03225 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Phac2g03225 203 Coils Coil 148 168 - -
Phac2g03225 203 Pfam K-box region 93 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g03225 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac2g03225 203 FunFam Transcription factor, MADS-box 13 81 - -
Phac2g03225 203 Coils Coil 122 142 - -
Phac2g03225 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03225 Phac-Chr2 33747154 33759428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03225 1 203 MADS-box Gene Family AT2G22540 47.257 1.62e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac2g03225 K-box 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03225 - - gmx:100815814 333.569