Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03162 ATGTCTCACTTCGGACGCTCTGGTCCCCCTGACATTTCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGTACCACTGCCGATGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACCGGTGAGTCGAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCTGACGAGGCTCAAAAGGCCGTTGAAAGGCTCGACGGAAGAATGGTTGATGGTCGGGAAATAACAGTCCAGTTTGCGAAGTATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAGACGGCCCAGAGATCAAGGTACCGGTCACGAAGTCGTAGTCCCAAGAGAAGCAGGTATCGTGATGATCACAGAGACCGGGATTATAAGAAGAGAAGTCGCAGTAGAAGCTATGATAGGTATGAACGTGACAGGCACCGTGGGAAAGACAGGGATTATCGTAACAGAAGCAGGAGCCGTAGTACCAGTCTTGATTACAAGGGTCGTGGGAGGGCACGCTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTTGATAGTCGTTCCCCTGCACGACGCAGTCCTAGTCCTCGAAAGAGTCCTTCCCCGCAGCGCAGTGCTTCCCCCCAAAGGAGTACATCCCCTAGGAAAAGCCCACGTGGTGAAAGTCCAGCAAATCGTAGCCGTGATGGACGTTCACCTTCCCCGCGCAGTGTATCACCACGTGGTCGCCCTGAAGCTTCACGAAGCCCTTCTCCTCGAAATTCAAATGGTGATGAGTAA 810 0.5185 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRYRSRSRSPKRSRYRDDHRDRDYKKRSRSRSYDRYERDRHRGKDRDYRNRSRSRSTSLDYKGRGRARYDDERHSRSRSRSVDSRSPARRSPSPRKSPSPQRSASPQRSTSPRKSPRGESPANRSRDGRSPSPRSVSPRGRPEASRSPSPRNSNGDE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03162 269 Gene3D - 5 103 IPR012677 -
Phac2g03162 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Phac2g03162 269 MobiDBLite consensus disorder prediction 102 269 - -
Phac2g03162 269 MobiDBLite consensus disorder prediction 198 230 - -
Phac2g03162 269 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Phac2g03162 269 CDD RRM_SRSF2_SRSF8 18 90 - -
Phac2g03162 269 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Phac2g03162 269 SMART rrm2_1 17 90 IPR003954 GO:0003676
Phac2g03162 269 SMART rrm1_1 17 90 IPR000504 GO:0003723
Phac2g03162 269 MobiDBLite consensus disorder prediction 123 197 - -
Phac2g03162 269 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 258 - -
Phac2g03162 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03162 Phac-Chr2 33136149 33140838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03162 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 1.07e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03162 K12891 - gmx:100778928 352.058