Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g03050 ATGCATAAATTCCTGAAGTTTGATATCTCAGGGAATCCGTGCTCGAACGACAACCATTTCCGTATAAGAAAGATGTTGAGAATTTGCAGAAGCAGAATCAGAATCAGAGAGAGAGAGATGGTGAAAATTTCAGTTGGTGGGTATGATGATGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGCAGGGAAGAGGAGGAAGAAGAAGAAGAACGAAACTCGCGACGAAGCTTTGAAATTGTAGACCGTTCAATTGAAATTCAAGAGCGTGAAGATCATCATCCTGCTCCACCCAATCGTGCTACCCCAAATGGGTCTGCAAGCAATGCCACCAGAGTTAGGTCCATTCCAATCTTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCCCCTGTCTTCCAGTGCGAGAATGGACATATTGCTTGCTCTAATTGCTGTGTCAGACTCAATAACAAGTGTCCCATGTGTTTGATGCCCATTGGGTATAACCGTTGTCGGGCTATTGAGAAAGTGTTGGACTCTATTAAAATGTCATGCCCGAATGCAAATTATGGCTGCACTGAGACATTTTGTTACAGCAAGAAAAACGACCATGAGAAGGAATGCATCTATCTACCATGTTTATGCCCACATACTGGTTGTGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACGTCAGCCACAGACATGTAGACTCTGGAACACAGTTTACATACGATAAATTTTTCACAGTCATCTTCAGTGCTGACCAGAAAACAATTGTTCTTCAAGAGAAAAATGATGGTAATCTATTTATTGTTCACAATAACCATGAGACTCTGGGACATAAAGTCCGCATTAGTTGCATTGGTCCCAAGTCCATGGGAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATACTGCAATCTTTTACCAAGATCATTCAAGGACAATACGCTGATGCTCCTTCAAATGCGTTCCTTTTGATTCCTTCTGGATTTTTTGGCCCTCTACAACTGAAACTGGACATTCGCATTAAGTCACATTAA 1068 0.4288 MHKFLKFDISGNPCSNDNHFRIRKMLRICRSRIRIREREMVKISVGGYDDGEGPSNRNQKRRREEEEEEEERNSRRSFEIVDRSIEIQEREDHHPAPPNRATPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLNNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHTGCDFVASSKELFLHVSHRHVDSGTQFTYDKFFTVIFSADQKTIVLQEKNDGNLFIVHNNHETLGHKVRISCIGPKSMGEFQYEVLARFRGSTLILQSFTKIIQGQYADAPSNAFLLIPSGFFGPLQLKLDIRIKSH* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g03050 355 SUPERFAMILY TRAF domain-like 181 352 - -
Phac2g03050 355 ProSiteProfiles Zinc finger RING-type profile. 128 163 IPR001841 -
Phac2g03050 355 Pfam Seven in absentia protein family 171 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phac2g03050 355 ProSiteProfiles Zinc finger SIAH-type profile. 181 239 IPR013010 GO:0008270
Phac2g03050 355 MobiDBLite consensus disorder prediction 45 109 - -
Phac2g03050 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Phac2g03050 355 MobiDBLite consensus disorder prediction 54 97 - -
Phac2g03050 355 CDD RING-HC_SIAHs 126 163 - -
Phac2g03050 355 SUPERFAMILY RING/U-box 127 169 - -
Phac2g03050 355 Coils Coil 56 76 - -
Phac2g03050 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 70 354 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g03050 Phac-Chr2 32287740 32289618 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g03050 99 238 C3H Transcription Factor Family AT2G41980 33.099 1.58e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g03050 K04506 - gmx:100778869 498.049