Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02853 ATGGGGCGTGGAAGGATACCTATGGATCTGATTGAAAAAGAGAAGGCTCGAAAGACAACATTTCAAAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAGTCGATGTTGGTGTAATTATCTTTGCATCAAAGTTTCTTGATGAACCTGAAATATGGCCACAAGATCCAAGAAAGTTAAAATGTGTGATTGAGAAATATCTGAACACGACCAGTGATAGGCGTCCGAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAGGATGAAAAGGATTGAAGGTGATATTTCCAAAGTGCAAAAAGGGAAGATCCAGCTTATGTACCCAACCTGGGATGACTCTTACGATGCTCTTGGAGAGGAACAGTTGAGGATGTTTGTTAGCATTCTGGATGCTAAGCTTGATGTTTGTACTCAAAGGATGAATATGTTGAAGCAAGATTCAAACGGAAAAGCAATAGTAGAATTGGTCAAAGATGAAGCAGGTGTTCCCTACGTGGCCCCAAATTTAGGTAGTCACCTCAATTTCATGCAGAACATGTCTCAGACACAGATTTTCCCTCCTAATGATAACAGCCAAGTACCATTTTATCCATTTCATCTAAGCCAAAATGTGCCTTCTTTGTTTCAACTGGGCCAAAACTTTAGGCAATTGATGGAAAAAAATGGAACTGTGGATTGGGGTAATCAAGTTGGTGCAAGTGATCACAAAATGGGTACACAACAGGAGAATGGATCAGACAAAAACCAAAACTCCTCATCATGTTATTACAATGGAAATATGCAAACAATGCAGGCATATAATAATGCTGCTTTGCAAACTCTTCCTTCTCAATTGCAGTTCGATGCAACATTCCAGACCCTGTCAAATCGACCAGGTCCACCACGGGGATTTGACCCTAATGGCTATGATGATTCAAATATGCTTCAACCTCATTTTTTAAACTATATGCACAGGAGGAAGTAG 984 0.3963 MGRGRIPMDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQDPRKLKCVIEKYLNTTSDRRPKVYDVEEYFSERMKRIEGDISKVQKGKIQLMYPTWDDSYDALGEEQLRMFVSILDAKLDVCTQRMNMLKQDSNGKAIVELVKDEAGVPYVAPNLGSHLNFMQNMSQTQIFPPNDNSQVPFYPFHLSQNVPSLFQLGQNFRQLMEKNGTVDWGNQVGASDHKMGTQQENGSDKNQNSSSCYYNGNMQTMQAYNNAALQTLPSQLQFDATFQTLSNRPGPPRGFDPNGYDDSNMLQPHFLNYMHRRK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02853 327 CDD MADS 2 51 - -
Phac2g02853 327 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 240 - -
Phac2g02853 327 MobiDBLite consensus disorder prediction 233 262 - -
Phac2g02853 327 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Phac2g02853 327 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac2g02853 327 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac2g02853 327 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac2g02853 327 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Phac2g02853 327 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Phac2g02853 327 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Phac2g02853 327 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02853 Phac-Chr2 30121720 30122897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02853 1 146 Type I MADS-box Gene Family AT5G55690 37.086 3.37e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac2g02853 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02853 - - ccaj:109800518 414.846