Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02797 ATGGATGAACAAAATCAACAAAGTGTGCCGGTTCTACCGTGGCTGCGCCACCCCGTCGACGTCACTCGCTGTGAAGAACTCTCCCTCTGCAGGGTTCCTTTCCTGGACCGCCGGTTAAAGTCGGCACTAAAGAATATGGAAATCTCGAAGCTGTTCCCAGTTCAAGTCGCGCTTTGGCAAGAGATCGTTGGACTAGGTGACTTTGAGCGAGACCTTTGTGTAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAAGTTGTTGCCTGCTTCCCGTGTCAAGTACCTCCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTTGATGCTATTGCATTGCCATTAGGCTTGTGTGTGGGCTTGGCTGTTGGTCAATCTTCAGTCACTGATGAAATTTCTAGTCTCGTTCACCTACCGGGGGATGATGAGGATTCAGATCTTGGTTTTTTCTCTCCATTATGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCCATTTGTCTAGGGGTTTCACATTGAAACATCTTTATTATCTTGTAGTTGATGAAGCAGATCGGTTGCTCCGGGAGGACTATCAGTCCTGGTTACCCACTGTACTTAGATCCACCCAATCTAGCAATAATGATGATGATGGTGGTGTCCCTTATTCTCCCTGGAACAGAAGAACATGTGGTAGAGTTGAGAGCGGGTTCAGGCCTCACTCTAGGCTGGCAAAGGTGCTTTTATCTGCGACATTAACTCGAGACCCAGGGAGGCTTGTTCAGCTTAATATGCATCACCCTTTGTTCCTCAGCAGTGGCAAAATGCGGTATAGGCTCCCAAAAAATTTGGAATCATACAAACTGATATGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAAATTGCTGAAATATTTTGGAGATCTACAAATTGATATTAAGGAGTATTCTGGTCATCAACATCAACGTGTAAGAAGGTTCTACTTTAGATATCCCAAATTTATTGAAAACTATACATGCCAGTGTTTTGATAAAAAAATGCTACTTCTCTGCAGCAAGACACTGAATGAGTTTCGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTAGGGGAATGGACGTAGAAGGGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCAGGCCAGACTGGGTGTTGCTTCACATTGATGTCAAACGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTGAGGCCAGTGCTTCTCTTGAGTATACTGTTCCATCCCGTTTGATTGAAGAACTTCATAGTACCTACCAATCAGGTAAATATCTTAAATCCCATTTTCGTGTGTAA 1521 0.4431 MDEQNQQSVPVLPWLRHPVDVTRCEELSLCRVPFLDRRLKSALKNMEISKLFPVQVALWQEIVGLGDFERDLCVNSPTGSGKTLAYALPIVQKLLPASRVKYLRALVVVPTRDLALQVKQVFDAIALPLGLCVGLAVGQSSVTDEISSLVHLPGDDEDSDLGFFSPLWFQSKVDILVATPGRLVDHVHLSRGFTLKHLYYLVVDEADRLLREDYQSWLPTVLRSTQSSNNDDDGGVPYSPWNRRTCGRVESGFRPHSRLAKVLLSATLTRDPGRLVQLNMHHPLFLSSGKMRYRLPKNLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLKYFGDLQIDIKEYSGHQHQRVRRFYFRYPKFIENYTCQCFDKKMLLLCSKTLNEFRKGQFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGCCFTLMSNDEVGRFKKLMKKAEASASLEYTVPSRLIEELHSTYQSGKYLKSHFRV* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02797 506 Pfam DEAD/DEAH box helicase 53 272 IPR011545 GO:0003676|GO:0005524
Phac2g02797 506 Gene3D - 289 486 IPR027417 -
Phac2g02797 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Phac2g02797 506 CDD SF2_C_DEAD 299 456 - -
Phac2g02797 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 469 IPR027417 -
Phac2g02797 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 286 IPR014001 -
Phac2g02797 506 PANTHER RNA HELICASE 35 471 - -
Phac2g02797 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 490 IPR001650 -
Phac2g02797 506 SMART ultradead3 47 302 IPR014001 -
Phac2g02797 506 Gene3D - 15 288 IPR027417 -
Phac2g02797 506 Pfam Helicase conserved C-terminal domain 311 448 IPR001650 -
Phac2g02797 506 CDD DEADc_DDX51 39 287 - -
Phac2g02797 506 SMART helicmild6 338 448 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02797 Phac-Chr2 29528277 29535502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02797 70 462 Eukaryotic Initiation Factors Gene Family AT3G19760 22.901 1.03e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02797 K14807 - gmx:100789424 652.514