Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02796 ATGGATGAACAAAATCAACAAAGTGTGCCGGTTCTACCGTGGCTGCGCCACCCCGTCGACGTCACTCGCTGTGAAGAACTCTCCCTCTGCAGGGTTCCTTTCCTGGACCGCCGGTTAAAGTCGGCACTAAAGAATATGGAAATCTCGAAGCTGTTCCCAGTTCAAGTCGCGCTTTGGCAAGAGATCGTTGGACTAGGTGACTTTGAGCGAGACCTTTGTGTAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAAGTTGTTGCCTGCTTCCCGTGTCAAGTACCTCCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTTGATGCTATTGCATTGCCATTAGGCTTGTGTGTGGGCTTGGCTGTTGGTCAATCTTCAGTCACTGATGAAATTTCTAGTCTCGTTCACCTACCGGGGGATGATGAGGATTCAGATCTTGGTTTTTTCTCTCCATTATGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCCATTTGTCTAGGGGTTTCACATTGAAACATCTTTATTATCTTGTAGTTGATGAAGCAGATCGGTTGCTCCGGGAGGACTATCAGTCCTGGTTACCCACTGTACTTAGATCCACCCAATCTAGCAATAATGATGATGATGGTGGTGTCCCTTATTCTCCCTGGAACAGAAGAACATGTGGTAGAGTTGAGAGCGGGTTCAGGCCTCACTCTAGGCTGGCAAAGGTGCTTTTATCTGCGACATTAACTCGAGACCCAGGGAGGCTTGTTCAGCTTAATATGCATCACCCTTTGTTCCTCAGCAGTGGCAAAATGCGGTATAGGCTCCCAAAAAATTTGGAATCATACAAACTGATATGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAAATTGCTGAAATATTTTGGAGATCTACAAATTGATATTAAGGAGTATTCTGGTCATCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTTCGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTAGGGGAATGGACGTAGAAGGGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCAGGCCAGACTGGGTGTTGCTTCACATTGATGTCAAACGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTGAGGCCAGTGCTTCTCTTGAGTATACTGTTCCATCCCGTTTGATTGAAGAACTTCATAGTACCTACCAATCAGCACTATCAAAATTGAAGGACTGTCGGAGGAAACCCAAGGATAAGTCCTGTCCATAG 1467 0.454 MDEQNQQSVPVLPWLRHPVDVTRCEELSLCRVPFLDRRLKSALKNMEISKLFPVQVALWQEIVGLGDFERDLCVNSPTGSGKTLAYALPIVQKLLPASRVKYLRALVVVPTRDLALQVKQVFDAIALPLGLCVGLAVGQSSVTDEISSLVHLPGDDEDSDLGFFSPLWFQSKVDILVATPGRLVDHVHLSRGFTLKHLYYLVVDEADRLLREDYQSWLPTVLRSTQSSNNDDDGGVPYSPWNRRTCGRVESGFRPHSRLAKVLLSATLTRDPGRLVQLNMHHPLFLSSGKMRYRLPKNLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLKYFGDLQIDIKEYSGHQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGCCFTLMSNDEVGRFKKLMKKAEASASLEYTVPSRLIEELHSTYQSALSKLKDCRRKPKDKSCP* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02796 488 Pfam DEAD/DEAH box helicase 53 272 IPR011545 GO:0003676|GO:0005524
Phac2g02796 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 443 IPR027417 -
Phac2g02796 488 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Phac2g02796 488 Gene3D - 295 486 IPR027417 -
Phac2g02796 488 Gene3D - 15 289 IPR027417 -
Phac2g02796 488 Coils Coil 461 481 - -
Phac2g02796 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 286 IPR014001 -
Phac2g02796 488 PANTHER RNA HELICASE 35 446 - -
Phac2g02796 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 464 IPR001650 -
Phac2g02796 488 SMART helicmild6 338 422 IPR001650 -
Phac2g02796 488 CDD SF2_C_DEAD 299 430 - -
Phac2g02796 488 SMART ultradead3 47 302 IPR014001 -
Phac2g02796 488 Pfam Helicase conserved C-terminal domain 311 422 IPR001650 -
Phac2g02796 488 CDD DEADc_DDX51 39 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02796 Phac-Chr2 29528230 29535502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02796 70 436 Eukaryotic Initiation Factors Gene Family AT3G19760 24.523 1.49e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02796 K14807 - gmx:100789424 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02796 2 29528230 29535502 Phac2g02796 2 29528230 29535502 ECH