LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g02723	ATGGTGAAGTACTCAAGGGAGCCAAACAATCCTACTAAGTCTTGCAAGGCAAGAGGCGCCGACCTTAGGGTTCATTTCAAGGTACCTGATCCTGCTACTTTGGTTACCATTCTGTGGGCGTGTTGCCTCTGTGAGCACGCCTCTCGTAAACTTCAGGGATATAATAAGCATTGTTATTGGGTGAATCTATGTTCTCTTTTTGTGACTGATGGTTCAGTAAATGATGGAACACTTGAAGGCAAACTGAACACTAGGGAAAGTGCGTTTGCAATTAGGAAGTTGCCCCTAGTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCGTTCAGACGTTTCTGTCGTGGTGTTGGAAGGACAGCCCAAGCAAAGAGTAGACACTCTAATGGCCAAGGAAGATGGCCTGTCAAATCAGCAAAATTCATCCTTGATTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTTTACATTTCCCATATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCATGCCACATAGAATTGATATTGTCGGAAAAAGAAGAACCCGTTAGGAAGGAGCCCGAGACAAATTTGGCAACAAGCAAGAAGTCCCAAGCTCTACGAAGTGGTGCCTCTTCTTAG	711	0.4487	MVKYSREPNNPTKSCKARGADLRVHFKVPDPATLVTILWACCLCEHASRKLQGYNKHCYWVNLCSLFVTDGSVNDGTLEGKLNTRESAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLATSKKSQALRSGASS*	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g02723	236	SUPERFAMILY	Ribosomal protein L22	83	209	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Phac2g02723	236	CDD	Ribosomal_L22	83	206	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Phac2g02723	236	PANTHER	60S RIBOSOMAL PROTEIN L17	1	27	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Phac2g02723	236	NCBIfam	50S ribosomal protein L22	83	209	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Phac2g02723	236	MobiDBLite	consensus disorder prediction	222	236	-	-
	Phac2g02723	236	Gene3D	Ribosomal protein L22/L17	1	37	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Phac2g02723	236	Pfam	Ribosomal protein L22p/L17e	83	207	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Phac2g02723	236	Gene3D	Ribosomal protein L22/L17	81	235	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Phac2g02723	236	ProSitePatterns	Ribosomal protein L22 signature.	182	206	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Phac2g02723	236	MobiDBLite	consensus disorder prediction	208	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g02723	Phac-Chr2	28824000	28827732	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g02723	1	236	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	63.559	2.47e-96	277

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g02723	K02880		-	gmx:100499784	299.286

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac2g02723	2	28824000	28827732	Phac2g02723	2	28824000	28827732	ECH