Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02646 ATGGCTAGTGTCTTTCCTGCATGTTCAGGTTATGCTTCTCTTTTTCAAGGCACAAACTTCTTCCCCTTTGCAGCCAAGGGGTCTCCTCTACACCTAAAAACCCCACTCTCTGCCAAATGTGTAGCTTCTCTGGGAACTGAGATATCAGTGCCTCCAGCAGTTGACACTTTCTGGCAGTGGCTCAAGGAAGAGGGTGTTGTCTCTCGCAAAACACCAGTGAAGCCTGGTATGGGGCCAGAAGGCCTAGGATTGATTGCACTCAAAGACATTTCTAGGAATGAGGTTGTGTTACAGGTGCCCAAGAGGCTATGGATTAACCCTGATGCTGTGGCAGCTTCAGAGATTGGGAAAGTGTGTAGTGGATTGAAGCCTTGGTTGGCTGTTGCGTTGTTTCTGATAAGAGAGAGGTCAAAGGATGATTCTCTTTGGAAGCACTACTTCGGTATTCTGCCCAAGGAAACTGGCTCTACTATATATTGGTCAGAGGAGGAGCTCTCAGAGCTACAAGGGACTCAACTTCTAAGCACAACACTGAGTGTGAAAGAGTATGTAAAGAGCGAATTTAGGAGAGTGGAAGAAGAAATTATACTCCCTAATAAGAAGCTTTTCCCTTCTCCTATTACAATTGATGAATTTTTCTGGGCATTTGGAATTCTAAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCATTTGCTGACTTGATAAACCATAGTGCCAGAGTGACTACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGCCTTTTCTCCTGGGATTACCTATTTTCCCTAAGGAGCCCCCTTTCCCTCAAGGCTGGGGACCAGGTGTATATCCAATATGATTTGAATAAAAGCAATGCCGAGCTGGCTCTGGACTACGGTTTCATTGAACCAAATGCAGACCGGAATGCATATACCTTGACACTGCAGATATCTGAGTCAGACCCCTTTTTTGGTGACAAACTGGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATCTTCTACAACCGCCCACTTCCACCAGGGCTGCTTCCATATCTGAGACTAGTTGCTCTAGGGGGCACTGATGCTTTCCTTTTGGAGTCAATATTTAGAAATTCCATTTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAGGAGCTACTATGCAGAGTGATTAGAGAGACCTGCAAAACTGCCCTTGCTGCTTATCATACAACCATTGAAGAGGATCAAAAGTTGAAAGCAGCAAAGCTAGATTCAAGACTTGCTATAGCCGTGGGAATTAGAGAAGGGGAGAAGCAGCTCCTGCAGCAAATTGACGAGATCTTTAAGGAGAAAGAAATGGAATTGGCCGAGTTAGAATATTACCAAGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAATGGTGATATCCTAGGGGACCTTGGAAAATTCTTTTAG 1470 0.4483 MASVFPACSGYASLFQGTNFFPFAAKGSPLHLKTPLSAKCVASLGTEISVPPAVDTFWQWLKEEGVVSRKTPVKPGMGPEGLGLIALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCSGLKPWLAVALFLIRERSKDDSLWKHYFGILPKETGSTIYWSEEELSELQGTQLLSTTLSVKEYVKSEFRRVEEEIILPNKKLFPSPITIDEFFWAFGILRSRAFSRLRNENLVVIPFADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFFGDKLDIAESNGFGETAYFDIFYNRPLPPGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELLCRVIRETCKTALAAYHTTIEEDQKLKAAKLDSRLAIAVGIREGEKQLLQQIDEIFKEKEMELAELEYYQERRLKDLGLCGENGDILGDLGKFF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02646 489 Pfam Rubisco LSMT substrate-binding 320 444 IPR015353 -
Phac2g02646 489 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 487 IPR011192 GO:0009507|GO:0030785
Phac2g02646 489 CDD SET_RBCMT 65 303 IPR044431 GO:0016279|GO:0018022
Phac2g02646 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 53 431 - -
Phac2g02646 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 311 482 IPR036464 -
Phac2g02646 489 PIRSF RMT_SET 1 488 IPR011192 GO:0009507|GO:0030785
Phac2g02646 489 Gene3D set domain protein methyltransferase, domain 1 50 303 - -
Phac2g02646 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 50 302 - -
Phac2g02646 489 Pfam SET domain 81 287 IPR001214 GO:0005515
Phac2g02646 489 SUPERFAMILY SET domain 52 308 IPR046341 -
Phac2g02646 489 Gene3D - 304 468 IPR036464 -
Phac2g02646 489 SMART set_7 69 294 IPR001214 GO:0005515
Phac2g02646 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 304 468 - -
Phac2g02646 489 ProSiteProfiles SET domain profile. 64 288 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02646 Phac-Chr2 27623822 27627014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phac2g02646 SET 9.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02646 K00592 - gmx:100818113 861.292