Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02531 ATGGAAGTGGAGGCTACGAACCGTCAGAATGTGGCCAACAACAGCACGCGTCATCCCTTTTCACGGAATTTGGGAACCGCTGAGTCCCAACTCCTCCGTTTTGCCCCTTCCATTTCTTCATCGTTTTCTCTGCCAGGGTTTGAAATGGAGACGAAGGACAAAGTGAATAATGAGGATATTGCTGTGGAGTCTCCAACTTCGGTTCTCGAAGACGAGGATGTTTGTGTCCCCAAAGACGAGGTTAAGTTGGAAGAAGAGTTAATTGCTGATGTGAAAGACGATGGCTCGTCTTTTGTATCGAAGACTATGGCAGAGGAGGAAGAGAAGTTACTTAAAGCTAGGATAAAGGAAGAGGAGGTGCAGTTTGGGGAGGCACCTGACCTCAGCGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAACTGTACTCTGAGTTTTTGCTGGAGAAAATGGATGACATCGCACTTACTGTGGGTGAACAAGTGAAAGTGGAAGAACTAGAGAGTAATCCTTCTGCAAAGAGGGGACGTGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAGAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTGTAGATATGAAAATGACTGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGGGGGAAATTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACGATTGGATTTCTCTCGCATCTAAAAGCAAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGATGAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCCATTGTCTACCATGGTGGCAAGAAGGAGAGAGATGAGATCCGAAGGAAACATATGCCTACTAGAACAATTGGCCCAAAATTTCCTATAGTCATAACTTCTTACGAGGTTGCATTAAATGACGCTAGGAAATATTTCAGGCCATACAATTGGAAATATCTCGTTGTTGATGAGGGACACAGGCTCAAAAATTCAAAATGCAAATTAGTGAAGGAGTTGAAATACATAAAAGTTGAAAACAAGATTCTTCTAACTGGAACTCCTCTTCAGAATAACCTGGCCGAATTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGCGAAGGGCAATAATGAAGCAACCAAGGAAGAACTGGAAGAGAAACGGAGATCCCAAGTAGTAGCAAAGCTTCATGCTATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCAAAGAAAAAAGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACTTTGGGAAACTATTTAGAAGAAAAGATGTCAAGCGGACGCCCTGTTCCTGGAGGTGCGATTCGTAATTTGGTTATTCAGCTTAGGAAAGTGTGTAACCATCCTGATCTTCTAGAATCAGCTTATGATGATACATCTTCCTATCCTCCTTTAAGTGAGATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAATGGACTAAAGTGTTGGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTAGATGAGAGGAAACGACAGATCGAGGACTTCAACGATGCAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAACCTGTTCATGTCTACCGGCTCTCAACTGCTCAATCTATAGAGGATCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATTGGGAAAGGACAGTTTCATCAAGAACGTACAAAAACTGTCAACAGGGATGACATGGAGGAAGAGGATTTTTTGGCATTGCTTCGTGACGAAGAAACAGCTGAAGATAAAATGATTCGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATTATCGTCAACAACTCGGACGATGGTAAGTCGAAATCTCCATGCAGTACCATTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGATTCCAAATGCGAGTGGAGGCATGCTCTCTACTCTCAACAGCTAG 2436 0.4212 MEVEATNRQNVANNSTRHPFSRNLGTAESQLLRFAPSISSSFSLPGFEMETKDKVNNEDIAVESPTSVLEDEDVCVPKDEVKLEEELIADVKDDGSSFVSKTMAEEEEKLLKARIKEEEVQFGEAPDLSDTQFNKLDELLTQTKLYSEFLLEKMDDIALTVGEQVKVEELESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTVDMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWMNEISRFAPSLPAIVYHGGKKERDEIRRKHMPTRTIGPKFPIVITSYEVALNDARKYFRPYNWKYLVVDEGHRLKNSKCKLVKELKYIKVENKILLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPKKKEIIIYANMTEHQKNLQDHLVNKTLGNYLEEKMSSGRPVPGGAIRNLVIQLRKVCNHPDLLESAYDDTSSYPPLSEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDERKRQIEDFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERTKTVNRDDMEEEDFLALLRDEETAEDKMIRTDISDEDLEKLLDRSDLIIVNNSDDGKSKSPCSTIPLKGPGWEVVIPNASGGMLSTLNS* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02531 811 Coils Coil 101 121 - -
Phac2g02531 811 PANTHER SNF2/RAD54 HELICASE FAMILY 73 743 - -
Phac2g02531 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 764 IPR027417 -
Phac2g02531 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 568 734 IPR001650 -
Phac2g02531 811 Gene3D - 207 469 IPR038718 -
Phac2g02531 811 Pfam Helicase conserved C-terminal domain 571 678 IPR001650 -
Phac2g02531 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 251 420 IPR014001 -
Phac2g02531 811 Gene3D - 476 777 IPR027417 -
Phac2g02531 811 FunFam ATP-dependent DNA helicase DDM1 233 479 - -
Phac2g02531 811 Pfam SNF2-related domain 242 542 IPR000330 GO:0005524|GO:0140658
Phac2g02531 811 MobiDBLite consensus disorder prediction 169 191 - -
Phac2g02531 811 FunFam Chromatin complex subunit A 106 480 709 - -
Phac2g02531 811 MobiDBLite consensus disorder prediction 1 23 - -
Phac2g02531 811 SMART helicmild6 594 678 IPR001650 -
Phac2g02531 811 SMART ultradead3 235 431 IPR014001 -
Phac2g02531 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 470 IPR027417 -
Phac2g02531 811 CDD SF2_C_SNF 554 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02531 Phac-Chr2 26589991 26596345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02531 225 699 RAD5 or RAD16-like Gene Family AT3G16600 24.310 7.85e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac2g02531 SNF2_N 3.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02531 K19001 - gmx:100777687 1323.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02531 2 26589991 26596345 Phac2g02531 2 26589991 26596345 ECH