Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02528 ATGGGAGACTTCAACAACAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGTACCAAAGCTCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCAAACTTGCTGAAGCTATTCGAACCTAGGCCTCCCTTGGAGTACAAACCGCCGCCGGAGAAACGGAAATGTCCTCCGTTGACAGGGATGGCACAATTTGTGAGCAAATTTGCCGAGCCTGGGGATCCAGAATATTCGCCACCTATTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCACAGAATGACCCAAATGTATCTGGGGATCCATACAAGACATTGTTTGTGGCCAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTATAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGAGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAGCAGTCTCGTTCTGAAGAACCAAGAGCGCGAGAGGACCGGCATAATGATAGAGACAGGGAAATATCACGTGAAAAAGGTAGGGATAGAGACAGAGAACGGGAGCGATCACGAGAGCATTCTCATGAAAGGGTCAGGGATCGTGACTATAGAGAGGATAGACACCACAGGGACCGAGACAGGACAAGGGACAGAGACAGGGAAAGAGATAGAGACCGTGGACGTGATCGAGATAGGGCACGGGATCGTGACAGGGATAGAGACCGTGATCGACATCGTGAAAGGGATAGAGATTATGAAGTTGGGGACACTGATCGACGTTCACGTGATAGGGAGTCTGAATATGATCGGGTTGAATCTAAACAGGAGAGGGACCAACATGGGGAAAGGAATCGTGACTATGAGCCTGAGGATGATCGTGGTAGGCATAACCAGTATGAGCATGGACGTCGACATGCTGACCCTGATCATGACCCTGAGCAGTATGACCACTACCATCATGGAGATGATCGTGGTGATCATTACAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGCAGGACGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGATTATCGTCGCTCAGAGAGATCTCATTCCCGGGAGTATGACTACTAG 1437 0.4823 MGDFNNNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPIPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRAREDRHNDRDREISREKGRDRDRERERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYEVGDTDRRSRDRESEYDRVESKQERDQHGERNRDYEPEDDRGRHNQYEHGRRHADPDHDPEQYDHYHHGDDRGDHYNQYHDHDRMEDDYHAGRATSESHEKEKSHGTDRDYRRSERSHSREYDY* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02528 478 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 64 327 - -
Phac2g02528 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Phac2g02528 478 MobiDBLite consensus disorder prediction 225 478 - -
Phac2g02528 478 Gene3D - 130 255 IPR012677 -
Phac2g02528 478 SUPERFAMILY RNA-binding domain, RBD 131 243 IPR035979 GO:0003676
Phac2g02528 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Phac2g02528 478 CDD RRM_snRNP70 142 232 IPR034143 GO:0030619
Phac2g02528 478 MobiDBLite consensus disorder prediction 246 478 - -
Phac2g02528 478 SMART rrm1_1 144 217 IPR000504 GO:0003723
Phac2g02528 478 MobiDBLite consensus disorder prediction 86 106 - -
Phac2g02528 478 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 46 134 IPR022023 -
Phac2g02528 478 FunFam U1 small nuclear ribonucleoprotein 70 kDa 130 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02528 Phac-Chr2 26564851 26570244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02528 145 191 C2H2 Transcription Factor Family AT2G19380 42.553 2.20e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02528 K11093 - gmx:100814484 649.818