Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02494 ATGAATCATCGACCTTTCCAAGACCACATGATGTTCATCTCTCAGTTATACCCCGCTGATGCACCATACACGCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGTGAAAACGGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGCGGAGCAAGTTAACCTACTTGAACAGAACTTTGGAAATGAACATAAACTTGAGTCTGAGAGGAAAGACAAGCTCGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCAGTATGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAGCTAGAAGAAGAGTACTCAAACCTTAAAAAATCCCATGAAGCCACCTTGCTCGAGAAATGTCGATTGGAGACCGAGGTACTGAAGCTGAAAGATCAACTTTCTGAGGCGGCGAAGGAGATTCAGAGGCTGCTAGAGAGTGGTGATAGAGTTCCAAGTAACAGCTCTAGCTCGTCACAGTCACAATCACAATCTATGGAGGCAGTGGACCCACCATTTTTTGGAGTGTTTGGAGTTGATGGATATGATGATGATGTATTGTACGGGCCCGAGACTCAGTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA 651 0.4485 MNHRPFQDHMMFISQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANKKRKLSAEQVNLLEQNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATLLEKCRLETEVLKLKDQLSEAAKEIQRLLESGDRVPSNSSSSSQSQSQSMEAVDPPFFGVFGVDGYDDDVLYGPETQCMNALEWINLYM* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02494 216 CDD homeodomain 56 112 IPR001356 GO:0003677
Phac2g02494 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Phac2g02494 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 174 IPR045224 GO:0003700
Phac2g02494 216 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Phac2g02494 216 MobiDBLite consensus disorder prediction 28 60 - -
Phac2g02494 216 SUPERFAMILY Homeodomain-like 55 120 IPR009057 -
Phac2g02494 216 Coils Coil 103 130 - -
Phac2g02494 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Phac2g02494 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Phac2g02494 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Phac2g02494 216 SMART HOX_1 54 115 IPR001356 GO:0003677
Phac2g02494 216 MobiDBLite consensus disorder prediction 45 60 - -
Phac2g02494 216 Coils Coil 51 71 - -
Phac2g02494 216 MobiDBLite consensus disorder prediction 156 177 - -
Phac2g02494 216 MobiDBLite consensus disorder prediction 159 177 - -
Phac2g02494 216 Gene3D - 47 121 - -
Phac2g02494 216 Coils Coil 138 158 - -
Phac2g02494 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02494 Phac-Chr2 26356748 26358964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02494 1 216 Homeobox Transcription Factor Family AT4G36740 57.399 3.73e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phac2g02494 Homeodomain 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02494 K09338 - gmx:100809616 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02494 2 26356748 26358964 Phac2g02494 2 26356748 26358964 ECH