Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02474 ATGATATCTCATAATATTACTTTTAGTTATTGGCATTTTGCTTTAAACATTATTATTATTGGTGTTCTCTTTCCAAATTTTAGTGTTGCAAAACAATCTAAAATACATGAATTGAAAATGAATGTGATCGATCAATGTTGGAGATTGAATCTTAAATGGAGGATGCATCGACCTCAACTAGCAACATGTTCTATAGGCTATGCCGGCAAGATGATAAACAACATTGGCGAAGACCTCATCCATTATAAAGTTATTGACCCTAGTGATGATCCTATAAATCCTAAGCCTGGTACCTTAAGGTATGGAGCATCTGTAATTCAAGGTAAAGTGTGGATTACATTCCAAAGAGACATGCATATTAAACTCGAGAGACCCCTTCTTATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTTGACATTGCTAAAAATGCATGTTTAATGGTCTTTAAGGCCACAAATATAATCATTCATGGCATTCGAATTCATCATTGCAAACCTCAAACTCCAGGGGTTACGATGGGACCAGAAGGAAAGGTGATTTCTCTGGGCCATGTAGATGGAGATGCAATAAGATTAGTTACTACTTCAAAGATTTGGATTGATCATAATACACTTTATAATTGTCAAGATGGTCTACTTGATGTAACACGAGGTTCGACTGATATCACTATATCTAATAACTGGTTTAAAAATCAAGACAAGGTTATGCTTCTTGGACATGATGATGGTTATGTGAGAGATAAGAACATGAAGGTTACTGTCGTATACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGTGAACAATCTTTACTTAGGTTGGCTGCAATATGCCATTGGTGGAAGTATGAGACCTAGCCTCAAAAGTGAAGCTAATCTTTTTATAGCACCAACAAGAGGGAATAAGGAGGTGACATGGAGAAAGGATAATAATACAAATGGAGATGCATGGGAGTTTCATTCCGTAAAAGACGCATTCGAGAATGGAGCTTCTTTCACAGTAACAAAAGGAGGACGTGTGCCAAAACCAAACTATAACGCAGAACAACGTTTTAAAGTTGTTAATGTTAAATATGTGAGATCGTTAACCCGCTCATCAGGCATATTACGATGCACTAAAACATCTCTATGTGGATAA 1179 0.3664 MISHNITFSYWHFALNIIIIGVLFPNFSVAKQSKIHELKMNVIDQCWRLNLKWRMHRPQLATCSIGYAGKMINNIGEDLIHYKVIDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVDIAKNACLMVFKATNIIIHGIRIHHCKPQTPGVTMGPEGKVISLGHVDGDAIRLVTTSKIWIDHNTLYNCQDGLLDVTRGSTDITISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWLQYAIGGSMRPSLKSEANLFIAPTRGNKEVTWRKDNNTNGDAWEFHSVKDAFENGASFTVTKGGRVPKPNYNAEQRFKVVNVKYVRSLTRSSGILRCTKTSLCG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Phac2g02474 392 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Phac2g02474 392 Pfam Pectate lyase 128 308 IPR002022 -
Phac2g02474 392 SUPERFAMILY Pectin lyase-like 25 357 IPR011050 -
Phac2g02474 392 Gene3D - 40 384 IPR012334 -
Phac2g02474 392 SMART amb_all 117 314 IPR002022 -
Phac2g02474 392 PANTHER PECTATE LYASE 18-RELATED 37 388 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02474 Phac-Chr2 26169366 26170866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02474 71 318 Polysaccharide Lyase AT5G09280 70.565 1.17e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02474 K01728 - gmx:100780437 701.049