Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02464 ATGGACATATTTTCTGACAAAAGGTTTGCCAACCTGAAGGTGAATAATTTTGCTGAAATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCCGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATCTGGGATAACCACCGTAGTTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGATAAACTCTGTAAAATTGACCATGAGGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAAGATGAATATCTTGCTAAACTTCAACAAGAAGAAGATGAACGTCTCGCTAAAGTTCAACAAGAAGAAGATGAACACATTGCTAAAATTCAACGAGAAGATGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCCTTGGTTCTCCTCCTCGATCTGACAATGATTCTTCATTTTTATCTTATCCTCACCTCTTTCCCCCTGGACACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGCCAAGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATTCATGTCGTCTGCCTATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCATCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAAAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTGACTACTATTTCAAGGAGGCCAAAGATCGGAGCCGGCTACCAAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAG 1380 0.4123 MDIFSDKRFANLKVNNFAEMGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDHEEDEYLAKIQQEEDEYLAKLQQEEDERLAKVQQEEDEHIAKIQREDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTLGSPPRSDNDSSFLSYPHLFPPGHRICAGCKTEIGQGRFLSCMGGVWHPECFCCHSCRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPKIGAGYQVIDMITEPYKLIRRCEVTAILVLYGLPRINPSSRDDACMA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02464 459 CDD UDM1_RNF168_RNF169-like 117 175 - -
Phac2g02464 459 PANTHER PROTEIN DA1-RELATED 2 129 448 IPR045218 -
Phac2g02464 459 Pfam LIM domain 209 264 IPR001781 -
Phac2g02464 459 CDD LIM_DA1 209 261 - -
Phac2g02464 459 Coils Coil 108 150 - -
Phac2g02464 459 SMART lim_4 208 260 IPR001781 -
Phac2g02464 459 Pfam Protein DA1 358 449 IPR022087 -
Phac2g02464 459 Gene3D Cysteine Rich Protein 202 267 - -
Phac2g02464 459 ProSiteProfiles LIM domain profile. 207 267 IPR001781 -
Phac2g02464 459 SMART uim 168 187 IPR003903 -
Phac2g02464 459 SMART uim 61 80 IPR003903 -
Phac2g02464 459 FunFam Protein DA1-related 1 203 262 - -
Phac2g02464 459 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 292 - -
Phac2g02464 459 ProSitePatterns LIM zinc-binding domain signature. 209 243 IPR001781 -
Phac2g02464 459 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 234 - -
Phac2g02464 459 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 168 181 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02464 Phac-Chr2 26006006 26013350 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac2g02464 DA1-like 5.3e-42 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02464 - - vum:124826554 829.706