Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02460 ATGGACATATTTTCTGACAAAAGGTTTGCCAACCTGAAGGTGAATAATTTTGCTGAAATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCCGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATCTGGGATAACCACCGTAGTTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGATAAACTCTGTAAAATTGACCATGAGGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAAGATGAATATCTTGCTAAACTTCAACAAGAAGAAGATGAACGTCTCGCTAAAGTTCAACAAGAAGAAGATGAACACATTGCTAAAATTCAACGAGAAGATGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCCTTGGTTCTCCTCCTCGATCTGACAATGATTCTTCATTTTTATCTTATCCTCACCTCTTTCCCCCTGGACACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGCCAAGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATTCATGTCGTCTGCCTATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCATCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAAAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTGACTACTATTTCAAGGAGGCCAAAGATCGGAGCCGGCTACCAAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCGGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTGTATACGGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCCGATTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAATCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACCAAGCAATGCTCAAGTATGGCCTCAAAAGCACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1737 0.4162 MDIFSDKRFANLKVNNFAEMGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDHEEDEYLAKIQQEEDEYLAKLQQEEDERLAKVQQEEDEHIAKIQREDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTLGSPPRSDNDSSFLSYPHLFPPGHRICAGCKTEIGQGRFLSCMGGVWHPECFCCHSCRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPKIGAGYQVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYTGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKSTLDHIHMTGSFPY* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02460 578 CDD UDM1_RNF168_RNF169-like 117 175 - -
Phac2g02460 578 Gene3D Cysteine Rich Protein 202 267 - -
Phac2g02460 578 Pfam Protein DA1 358 573 IPR022087 -
Phac2g02460 578 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 234 - -
Phac2g02460 578 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 292 - -
Phac2g02460 578 CDD LIM_DA1 209 261 - -
Phac2g02460 578 Coils Coil 108 150 - -
Phac2g02460 578 SMART lim_4 208 260 IPR001781 -
Phac2g02460 578 ProSiteProfiles LIM domain profile. 207 267 IPR001781 -
Phac2g02460 578 SMART uim 168 187 IPR003903 -
Phac2g02460 578 SMART uim 61 80 IPR003903 -
Phac2g02460 578 MobiDBLite consensus disorder prediction 498 524 - -
Phac2g02460 578 FunFam Protein DA1-related 1 203 262 - -
Phac2g02460 578 Pfam LIM domain 209 264 IPR001781 -
Phac2g02460 578 ProSitePatterns LIM zinc-binding domain signature. 209 243 IPR001781 -
Phac2g02460 578 MobiDBLite consensus disorder prediction 498 520 - -
Phac2g02460 578 PANTHER PROTEIN DA1-RELATED 2 20 578 IPR045218 -
Phac2g02460 578 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 168 181 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02460 Phac-Chr2 26006006 26013350 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac2g02460 DA1-like 4.4e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02460 - - vum:124826554 1064.68