Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02458 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCCGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATCTGGGATAACCACCGTAGTTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGATAAACTCTGTAAAATTGACCATGAGGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAAGATGAATATCTTGCTAAACTTCAACAAGAAGAAGATGAACGTCTCGCTAAAGTTCAACAAGAAGAAGATGAACACATTGCTAAAATTCAACGAGAAGATGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCCTTGGTTCTCCTCCTCGATCTGACAATGATTCTTCATTTTTATCTTATCCTCACCTCTTTCCCCCTGGACACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGCCAAGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATTCATGTCGTCTGCCTATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCATCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAAAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTGACTACTATTTCAAGGAGGCCAAAGATCGGAGCCGGCTACCAAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAG 1323 0.415 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDHEEDEYLAKIQQEEDEYLAKLQQEEDERLAKVQQEEDEHIAKIQREDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTLGSPPRSDNDSSFLSYPHLFPPGHRICAGCKTEIGQGRFLSCMGGVWHPECFCCHSCRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPKIGAGYQVIDMITEPYKLIRRCEVTAILVLYGLPRINPSSRDDACMA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02458 440 CDD LIM_DA1 190 242 - -
Phac2g02458 440 Gene3D Cysteine Rich Protein 184 248 - -
Phac2g02458 440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 273 - -
Phac2g02458 440 Pfam LIM domain 190 245 IPR001781 -
Phac2g02458 440 Coils Coil 89 131 - -
Phac2g02458 440 FunFam Protein DA1-related 1 184 243 - -
Phac2g02458 440 ProSitePatterns LIM zinc-binding domain signature. 190 224 IPR001781 -
Phac2g02458 440 PANTHER PROTEIN DA1-RELATED 2 3 429 IPR045218 -
Phac2g02458 440 CDD UDM1_RNF168_RNF169-like 98 156 - -
Phac2g02458 440 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 149 162 IPR003903 -
Phac2g02458 440 SMART lim_4 189 241 IPR001781 -
Phac2g02458 440 Pfam Protein DA1 339 430 IPR022087 -
Phac2g02458 440 SMART uim 42 61 IPR003903 -
Phac2g02458 440 SMART uim 149 168 IPR003903 -
Phac2g02458 440 ProSiteProfiles LIM domain profile. 188 248 IPR001781 -
Phac2g02458 440 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02458 Phac-Chr2 26006006 26013350 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac2g02458 DA1-like 4.9e-42 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02458 - - vum:124826554 836.639