Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02452 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCCGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATCTGGGATAACCACCGTAGTTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGATAAACTCTGTAAAATTGACCATGAGGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAAGATGAATATCTTGCTAAACTTCAACAAGAAGAAGATGAACGTCTCGCTAAAGTTCAACAAGAAGAAGATGAACACATTGCTAAAATTCAACGAGAAGATGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCCTTGGTTCTCCTCCTCGATCTGACAATGATTCTTCATTTTTATCTTATCCTCACCTCTTTCCCCCTGGACACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGCCAAGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATTCATGTCGTCTGCCTATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCATCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAAAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTGACTACTATTTCAAGGAGGCCAAAGATCGGAGCCGGCTACCAAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCGGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTGTATACGGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCCGATTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAATCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACCAAGCAATGCTCAAGTATGGCCTCAAAAGCACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1680 0.4185 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDHEEDEYLAKIQQEEDEYLAKLQQEEDERLAKVQQEEDEHIAKIQREDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTLGSPPRSDNDSSFLSYPHLFPPGHRICAGCKTEIGQGRFLSCMGGVWHPECFCCHSCRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPKIGAGYQVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYTGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKSTLDHIHMTGSFPY* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02452 559 CDD LIM_DA1 190 242 - -
Phac2g02452 559 MobiDBLite consensus disorder prediction 479 505 - -
Phac2g02452 559 Coils Coil 89 131 - -
Phac2g02452 559 ProSitePatterns LIM zinc-binding domain signature. 190 224 IPR001781 -
Phac2g02452 559 Pfam Protein DA1 339 554 IPR022087 -
Phac2g02452 559 CDD UDM1_RNF168_RNF169-like 98 156 - -
Phac2g02452 559 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 273 - -
Phac2g02452 559 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 149 162 IPR003903 -
Phac2g02452 559 SMART lim_4 189 241 IPR001781 -
Phac2g02452 559 SMART uim 42 61 IPR003903 -
Phac2g02452 559 SMART uim 149 168 IPR003903 -
Phac2g02452 559 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 215 - -
Phac2g02452 559 PANTHER PROTEIN DA1-RELATED 2 112 559 IPR045218 -
Phac2g02452 559 Gene3D Cysteine Rich Protein 183 248 - -
Phac2g02452 559 ProSiteProfiles LIM domain profile. 188 248 IPR001781 -
Phac2g02452 559 MobiDBLite consensus disorder prediction 479 501 - -
Phac2g02452 559 FunFam Protein DA1-related 1 184 243 - -
Phac2g02452 559 Pfam LIM domain 190 245 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02452 Phac-Chr2 26006006 26013350 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac2g02452 DA1-like 4.1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02452 - - vum:124826554 1064.68