Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02358 ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACGAAGACGTATGAGTTGGTGGAGGATCCCGGGACGAACGAGGTGATATCGTGGAGTGACAGTGGGAACACGTTTGTGGTGTGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCTAAATCTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCAGATAAATGGGAATTCGCAAACGAGCATTTCAAACGAGGGAAGAAGGAGCTTCTCTGCGACATCAAACGCCGCAAGACCGTGCCGCAATTGCCGGCGCTTCCACCGGAGGCTGGAAAATCCGGCGGCTATGGTAACTCTCCTTTAAACTCCGGCGGTGGAGACGACGCTGGGTCCACTTCTACCTCGTCCTCTTCGTCCGGTTCGAAGAACACGGGATTGGTGGAAACAAACACAACAGGTTCTCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTTCTGAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGTGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGAAGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACACTAGCAGACAAAAGAAACAACCACCACAAGAGAGTCCGCGAAGAGCAAATGGGCTTCGGTGGGCCTCGTCTCAAGGAATCCAAGCCCGTTGTTGACTTTGAACCTCTAAATCTCATCATGACGAGCAATAAGGTTTGCAACTGA 855 0.5053 MSQRSVPAPFLTKTYELVEDPGTNEVISWSDSGNTFVVWKHADFAKDLLPKSFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGKKELLCDIKRRKTVPQLPALPPEAGKSGGYGNSPLNSGGGDDAGSTSTSSSSSGSKNTGLVETNTTGSHELSSENQKLKKDNETLSCELARARKQCDELVAFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGEECLKLFGVWLKEDTLADKRNNHHKRVREEQMGFGGPRLKESKPVVDFEPLNLIMTSNKVCN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02358 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g02358 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g02358 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g02358 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g02358 284 MobiDBLite consensus disorder prediction 118 160 - -
Phac2g02358 284 Coils Coil 156 183 - -
Phac2g02358 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 208 IPR027725 -
Phac2g02358 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g02358 284 MobiDBLite consensus disorder prediction 104 168 - -
Phac2g02358 284 Gene3D - 2 101 IPR036388 -
Phac2g02358 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Phac2g02358 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g02358 284 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02358 Phac-Chr2 25245036 25247552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02358 2 284 HSF AT4G36990 50.336 6.62e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac2g02358 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02358 K09419 - gmx:100791543 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02358 2 25245036 25247552 Phac2g02358 2 25245036 25247552 ECH
Phac2g02358 2 25245036 25247552 Phac3g03830 3 38166887 38170316 PCT