Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02344 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGAATTCCGTGGGATGTCGATACTGAAGGATTAAGGGAATACATGAGCAAATTTGGGGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCGGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAAATGAGGGCACCAGTAAAAAAAGTTACTAGAATATTTGTAGCCAGGATCCCACAATCAGTTACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGCTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCGGTGGTGGTTGATCGAGCTACACCCAAGGATGAAGACTTTAAGCCTATTGGCAGCCGAATGCCACCACAAGGTGGATATGGTGCATACAATGCTTACATTTCTGCTGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCTGGCCCAATATATGGACGGGGAGAACCTGCTCGGAGAACCAGTAAGAAAATTTTTGTTGGCCGTCTTCCCCCAGAAGCATCTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGTCTCATGAGATTTGTGGGCATCAGGTTGCAATAGATTCGGCCACACCCGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGACGATTGGGGTTATGGAATTGGGAGACCATCTAGAGCAGATTGGAGGTACAGACCGTACTAG 1071 0.451 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDEDFKPIGSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02344 356 Gene3D - 88 175 IPR012677 -
Phac2g02344 356 Gene3D - 1 87 IPR012677 -
Phac2g02344 356 Gene3D - 221 306 IPR012677 -
Phac2g02344 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Phac2g02344 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Phac2g02344 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Phac2g02344 356 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 224 313 - -
Phac2g02344 356 FunFam RNA-binding family protein isoform 1 223 306 - -
Phac2g02344 356 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Phac2g02344 356 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Phac2g02344 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Phac2g02344 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Phac2g02344 356 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Phac2g02344 356 SUPERFAMILY RNA-binding domain, RBD 88 189 IPR035979 GO:0003676
Phac2g02344 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Phac2g02344 356 SUPERFAMILY RNA-binding domain, RBD 222 325 IPR035979 GO:0003676
Phac2g02344 356 SMART rrm1_1 93 164 IPR000504 GO:0003723
Phac2g02344 356 SMART rrm1_1 227 298 IPR000504 GO:0003723
Phac2g02344 356 SMART rrm1_1 5 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02344 Phac-Chr2 25151703 25156147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02344 17 274 Eukaryotic Initiation Factors Gene Family AT2G36660 24.427 9.37e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02344 K14411 - gmx:100795240 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02344 2 25151703 25156147 Phac2g02344 2 25151703 25156147 ECH