Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02295 ATGGTGGAAGCTCATATGAGGAAACAAGTTCCTCTCCAATGGTGGTTTAGAATGGCTGTGCTTCTTAGCTTAATCTTTTTCGGTGCCTGCTCTGACTCTTCTGAGAGTGTCTCATTTAGAAAAGGTTTGAAGACTGCTCCTCCTCCTTCTCCTGCTGTCAAGCTGAATACCCACAATTTTTCGCAGGTAGTGATTGACAACGGCATAGTTTCCCTCAATTTGTCAAATCCTGGAGGCTATATCATTGGACTATACTATGACGGAGCTAAGAATATCCTTGCTCAAACAAATCATGAAATTGATAGAGGGTACATGGACGTTGTTTGGAACGAATCAGGAAAACCTTCGATGTTTGAGAGAATCCATGGGACAAATTTTTCAGTCATCGAAGCAAGCGATACTTTGGTGGAGGTTTCATTTCTAAAAACATGGAAAGCTTCCCTGGAAGGCTCAAGTGTCCCCATAAACATAGACATAAGATATATATTGCGAAGTGGCGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACCAGGATTACCTGCAGTTACTGTTGATCAAATTAGAATTGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCATATCTGATACTAGGCAAAGGAAGATGCCAACTGCAGAAGATAGAACAACGGGGCAGGTCCTGGATTATCCTGAAGCTGTTCTCTTGACCCATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATACCAATACTCGAGTGAGAACAAAGATAACTCTGTTCATGGGTGGATTACAGAGGACGATTCAGCACCCGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGCTGGGCCCACTAAGCAAGACCTCACTTCTCATGTTGGCCCAACTTCTCTTTCCATGTTTACTAGCACTCATTATGCTGGCAAGAAGGTAATCATTGAATTTGATAAAGGGGAGGCTTATAAAAAGGTTTTTGGGCCAATTTTTGTTTACCTTAACTCTTTTCCTATCAAAACTCCGTTCAAGTCTCTGTGGTCAGATGCTGTACAACAGTTATCCAATGAAGAAAAAAAATGGCCTTACGATTTCATTGGATCAAAAGATTTCTTTCCACCCAATCAACGGGGAACGTTGTCAGGAACACTTCAAGTTAAAGATGGGGGAGGGGTGGCTCAACCAGCTAAAAGTTCTTACATTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAAGTACAACTTGTATGCATGGGTCCCTGGTTTCATAGGAAATTATAAATATCAAATTAATGTTATCAAACAAGGAGACAACATCAACTTGGGTACACTTGTATTCAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATAGGTCAGCTGCGGAGTTCTATGTACCAGACCCTAACCCAAAGCTCGTGAACAGATTATACCTAAACGATAGCATAAACGGGTTTAGGCAATACGGCTTGTGGGCACGTTACACTGATTTGTATCCAAAAAATGATCTCATTTTCACAGTCGGTGTTTCTGACTATCACAAGGATTGGTTTTATGCTCAAGTTACCAGGTACATAGGAGAAGGCAAATTCGTGGCAACCACATGGCAGATTCAATTCCAGCTTGAAAATATCATAAAGGGAGGAAACTACACACTGCAATTGGCCCTGGCATCCGCCACTAATTCCCAATTGGAGGTTAGGTTCAACAAACCGAAAGCAAACCCTCCATACTTCTCAACAGAACTGCTAATTGGCGATGACAATGCCATAGCAAGGCACGGCATCCATGGATTGTATAAGTTGTATACTGTAGCTGTAAACAGTAATCAACTGGTAAAAGGAAATAACATCATCTATTTGACACAGACATTAGTCAAAGGTCTATTTGAAGGAGTTATGTATGATTATATCCGATTAGAAAGTCCTCCAACGACTTATAAACAAACTTAA 2058 0.413 MVEAHMRKQVPLQWWFRMAVLLSLIFFGACSDSSESVSFRKGLKTAPPPSPAVKLNTHNFSQVVIDNGIVSLNLSNPGGYIIGLYYDGAKNILAQTNHEIDRGYMDVVWNESGKPSMFERIHGTNFSVIEASDTLVEVSFLKTWKASLEGSSVPINIDIRYILRSGDSGFYSYAIFTRPPGLPAVTVDQIRIVYKLDEDRFHYMAISDTRQRKMPTAEDRTTGQVLDYPEAVLLTHATDPQIRGEVDDKYQYSSENKDNSVHGWITEDDSAPVGFWVITPSNEFRNAGPTKQDLTSHVGPTSLSMFTSTHYAGKKVIIEFDKGEAYKKVFGPIFVYLNSFPIKTPFKSLWSDAVQQLSNEEKKWPYDFIGSKDFFPPNQRGTLSGTLQVKDGGGVAQPAKSSYIGLALPGDAGSWQTESKGYQFWTQTDKDGSFSITNIVPGKYNLYAWVPGFIGNYKYQINVIKQGDNINLGTLVFNPPRNGPTLWEIGIPDRSAAEFYVPDPNPKLVNRLYLNDSINGFRQYGLWARYTDLYPKNDLIFTVGVSDYHKDWFYAQVTRYIGEGKFVATTWQIQFQLENIIKGGNYTLQLALASATNSQLEVRFNKPKANPPYFSTELLIGDDNAIARHGIHGLYKLYTVAVNSNQLVKGNNIIYLTQTLVKGLFEGVMYDYIRLESPPTTYKQT* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02295 685 Pfam Polysaccharide lyase family 4, domain II 401 469 IPR029413 -
Phac2g02295 685 CDD RGL4_C 487 676 - -
Phac2g02295 685 SUPERFAMILY Galactose-binding domain-like 482 676 IPR008979 -
Phac2g02295 685 SUPERFAMILY Galactose mutarotase-like 57 342 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phac2g02295 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 679 - -
Phac2g02295 685 CDD RGL4_M 379 475 IPR029413 -
Phac2g02295 685 Pfam Rhamnogalacturonate lyase family 50 246 IPR010325 -
Phac2g02295 685 CDD RGL4_N 56 339 - -
Phac2g02295 685 Gene3D - 376 472 - -
Phac2g02295 685 Gene3D - 55 321 IPR014718 GO:0030246
Phac2g02295 685 Pfam Polysaccharide lyase family 4, domain III 485 675 IPR029411 -
Phac2g02295 685 Gene3D - 483 676 - -
Phac2g02295 685 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Phac2g02295 685 SUPERFAMILY Starch-binding domain-like 375 463 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02295 Phac-Chr2 24570708 24577257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02295 37 678 Polysaccharide Lyase AT1G09880 52.824 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02295 K18195 - gmx:100781089 990.719