Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02260 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGACGGGCTGAGCAAGGTGTCGTCTACCTTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCTACTGTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGTCTTCCCGGATCACAGTCACCTGAAAGGGATCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGACGAAAAGCCACTGTTCCCTTTGGTTCCTACCAAAGACGGGATTTTCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGAAAGTTTAATGGTAATACGGGGATGACTGCAATGCTATCACCTAGGCCTTCTGGTGCTCAGCCTTCTGCAATGAAAGAAATGCCGAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCATCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCCATGGCCACCACATCCAACAAGAACAATGACGAAGTAGATGGAAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACATATCAGGAGCTATCTTCTGCACTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGCTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGACCTTCTGCACGGTTCAGAGTATGTCCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTGGGGGATGTACCGTGGGAAATGTTCATTGATACTTGTAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTAG 1074 0.4739 MSPPAVVTEEDGLSKVSSTLASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSPAKLDEKPLFPLVPTKDGIFLSSQKTVVSGNKRGFADTMDGFSQGKFNGNTGMTAMLSPRPSGAQPSAMKEMPSKLQERPCSANNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02260 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Phac2g02260 357 MobiDBLite consensus disorder prediction 1 26 - -
Phac2g02260 357 Gene3D - 233 351 - -
Phac2g02260 357 MobiDBLite consensus disorder prediction 175 199 - -
Phac2g02260 357 MobiDBLite consensus disorder prediction 12 26 - -
Phac2g02260 357 FunFam Auxin-responsive protein 232 349 - -
Phac2g02260 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Phac2g02260 357 Pfam AUX/IAA family 75 348 IPR033389 -
Phac2g02260 357 SUPERFAMILY CAD & PB1 domains 236 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02260 Phac-Chr2 24287747 24293198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02260 239 342 B3 DNA Binding Superfamily AT5G37020 32.692 5.50e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac2g02260 AUX_IAA 8.8e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02260 K14484 - gmx:547502 671.389